PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0013s0168.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 213aa    MW: 23535.5 Da    PI: 6.0785
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0013s0168.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.89.6e-172271255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          ykGVr +k +g+Wv+eIr p++   r r++lg++++a +Aa+a +aa  +l+g
  Kalax.0013s0168.1.p 22 LYKGVRKRK-WGKWVSEIRLPNS---RDRIWLGSYDSAVKAARAFDAALYCLRG 71
                         59****999.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.58E-262181No hitNo description
Gene3DG3DSA:3.30.730.109.0E-282281IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-192281IPR016177DNA-binding domain
SMARTSM003804.6E-312285IPR001471AP2/ERF domain
PROSITE profilePS5103220.7052279IPR001471AP2/ERF domain
PfamPF008471.2E-92371IPR001471AP2/ERF domain
PRINTSPR003672.0E-82334IPR001471AP2/ERF domain
PRINTSPR003672.0E-84561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MASDSCSSSH HGREDSSSSS KLYKGVRKRK WGKWVSEIRL PNSRDRIWLG SYDSAVKAAR  60
AFDAALYCLR GSGAKFNFPH SPPDMRITRP LTHAEIQEIA TSYANEEPRS GGGAEHQPLS  120
PSSQFGELNL DHNNSSNSSS GVWSGNESQI DWPLWNLLDN VPDYRYPSAE YNSFLPYQPA  180
DPQSSFGQSV YDSGHDAGGE GFSQHNLSLW DF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-1523801573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12329KGVRKRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00151DAPTransfer from AT1G19210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002324785.17e-47ethylene-responsive transcription factor ERF017
TrEMBLB9IKF62e-45B9IKF6_POPTR; Uncharacterized protein
STRINGPOPTR_0018s08320.13e-46(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.14e-41ERF family protein