PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0013s0150.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HSF

Protein Properties

Length: 360aa MW: 40734.2 Da PI: 4.8689

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0013s0150.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	117	1.2e-36	42	133	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 Fl+k+y+i+++++++++isws+ +nsfvv+d++ fa ++Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++ weF++++F +g++ Kalax.0013s0150.1.p 42 FLTKTYDIVDNQSTNHIISWSSGNNSFVVWDPQAFAMTLLPRYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEEFLRGQR 122 9**************************************************************999.........********* PP XXXXXXXXXXX CS HSF_DNA-bind 92 ellekikrkks 102 +ll++i+r+++ Kalax.0013s0150.1.p 123 HLLSNIRRRRT 133 ******987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	1.96E-36	37	131	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	1.9E-39	38	131	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	4.1E-61	38	131	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.0E-31	42	131	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.6E-19	42	65	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.6E-19	80	92	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	81	105	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.6E-19	93	105	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MDRNYGGEGA SSDLGGGGSS SSKSAQIPVP MEGLHQSGPP PFLTKTYDIV DNQSTNHIIS 60 WSSGNNSFVV WDPQAFAMTL LPRYFKHNNF SSFVRQLNTY GFRKVDPDRW EFANEEFLRG 120 QRHLLSNIRR RRTSGSPQTP FPLSQQSADA CVEVGLFGSL DKEIDRLKRD KQMLMLEMAK 180 IRQQQKSNKT YLASMEQRLR GTEMKQQQLM RFLAKAIRNP AFMQQLIQQR ELRKNNLLVD 240 AANKRRHIDQ GPSDIGETVT KTEPFEDQYI NFETPQQQLN MMLGGTDLQS AGLSEPEGDQ 300 TPHMAVGDEQ ERSLDELFWD QFLNDNNAGE DLSFMGCDGE DDTEENLFIS DHFGDQGSS*

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MDRNYGGEGA SSDLGGGGSS SSKSAQIPVP MEGLHQSGPP PFLTKTYDIV DNQSTNHIIS  60
WSSGNNSFVV WDPQAFAMTL LPRYFKHNNF SSFVRQLNTY GFRKVDPDRW EFANEEFLRG  120
QRHLLSNIRR RRTSGSPQTP FPLSQQSADA CVEVGLFGSL DKEIDRLKRD KQMLMLEMAK  180
IRQQQKSNKT YLASMEQRLR GTEMKQQQLM RFLAKAIRNP AFMQQLIQQR ELRKNNLLVD  240
AANKRRHIDQ GPSDIGETVT KTEPFEDQYI NFETPQQQLN MMLGGTDLQS AGLSEPEGDQ  300
TPHMAVGDEQ ERSLDELFWD QFLNDNNAGE DLSFMGCDGE DDTEENLFIS DHFGDQGSS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	1e-25	37	136	15	125	Heat shock factor protein 1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	118	131	RGQRHLLSNIRRRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat stress. {ECO:0000269\|PubMed:18064488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT041877	2e-32	BT041877.1 Zea mays full-length cDNA clone ZM_BFb0071P12 mRNA, complete cds.
GenBank	BT088410	2e-32	BT088410.1 Zea mays full-length cDNA clone ZM_BFc0182A01 mRNA, complete cds.
GenBank	EU956923	2e-32	EU956923.1 Zea mays clone 1577511 heat shock factor protein HSF30 mRNA, complete cds.
GenBank	JX428494	2e-32	JX428494.1 Zea mays subsp. mays clone pUT3092 HSF11 transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023904745.1	1e-119	heat stress transcription factor A-6b-like isoform X1
Swissprot	Q6VBB2	1e-102	HFA2B_ORYSJ; Heat stress transcription factor A-2b
TrEMBL	A0A2C9W9T2	1e-115	A0A2C9W9T2_MANES; Uncharacterized protein
STRING	cassava4.1_029306m	1e-116	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22830.1	1e-101	heat shock transcription factor A6B

Link Out ? help Back to Top
Phytozome	Kalax.0013s0150.1.p

Publications ? help Back to Top
Rezaei MK,Shobbar ZS,Shahbazi M,Abedini R,Zare S Glutathione S-transferase (GST) family in barley: identification of members, enzyme activity, and gene expression pattern. J. Plant Physiol., 2013. 170(14): p. 1277-84 [PMID:23664583]