PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0013s0058.2.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

FAR1

Protein Properties

Length: 764aa MW: 88745.9 Da PI: 9.042

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0013s0058.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	81.6	1.3e-25	96	182	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Yn+YA + GF +rk+ s +s+rnge++++++vC+keg+++ ++ +++++r rtgC+ak+++ ++ +gkw+v+k++ eHnH+l+ Kalax.0013s0058.2.p 96 AYNHYAARRGFGIRKHFSARSRRNGEVIRKEYVCNKEGFKNVVPQT-IDHKKRRRDARTGCQAKMEIGQK-SGKWVVDKFSDEHNHPLT 182 5***************************************9999.89999999*********99.**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-23	96	182	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.2E-35	304	397	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.039	553	589	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.4E-5	564	591	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	3.7E-4	565	582	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 764 aa Download sequence Send to blast
MDQPNNNPQP TETETKPEEG ADGTLFYSGF PISQQSRLEN FMDYGSILSN NLMEDAPIQM 60 DSRNTDNTIV RDASCEKVID SLLGKYFDTM EEAYDAYNHY AARRGFGIRK HFSARSRRNG 120 EVIRKEYVCN KEGFKNVVPQ TIDHKKRRRD ARTGCQAKME IGQKSGKWVV DKFSDEHNHP 180 LTSPNKVLKH RSHCKYHKSI EGKKLIYDLH AAGLTPSQIM KAVNTLTGTL HEDITAKKCS 240 EVLRTHKRNH VGKECLGIIK HFQEKSGRGD DFYFNVQIDN DGCLRNVFWA DERSRTSYLK 300 FGDVMVFDVT YRTNKFKMPF SPFVGVNHHR QSVLFGGALL DDETEETFVW LFEQFLKCMN 360 FKPPQAIITD QDKAIRNAVK RVFPDARHRF CAWHIKKHVL EHIQPFRTRY KDFADTFYIW 420 IKSKSPKEFE EGWKILNEKY EIGEKGWLPT MYKDRRYWVK CYLKDTFFAG MTTSGRMAAR 480 RKSEEDEDFS TLNSQPALIT EHGIEKDAGR YYTRSIFQLF QREWHASLSL EHTKRQISDM 540 LVSYFVGSDR EQQTVEYDSE QQIVRCSCAK FETDGILCKH ALYILKKKKI KNLPKNYLLY 600 RWTIDARYHM AHKLVESEDA KASDHVVSAE EKWVARTMFH QIIRDADYSP SIFKEFIQTS 660 KIFMVRLRGE REVTENALIV ESSIQSQSTC EISHVELEPT QVTILDPACD KVNKGRPKSA 720 SRISSAIEKI KNYKCSECKR NGHNKTTCPE KKVLPKSFTA YGC*

Sequence ? help Back to Top

Protein Sequence Length: 764 aa Download sequence Send to blast

MDQPNNNPQP TETETKPEEG ADGTLFYSGF PISQQSRLEN FMDYGSILSN NLMEDAPIQM  60
DSRNTDNTIV RDASCEKVID SLLGKYFDTM EEAYDAYNHY AARRGFGIRK HFSARSRRNG  120
EVIRKEYVCN KEGFKNVVPQ TIDHKKRRRD ARTGCQAKME IGQKSGKWVV DKFSDEHNHP  180
LTSPNKVLKH RSHCKYHKSI EGKKLIYDLH AAGLTPSQIM KAVNTLTGTL HEDITAKKCS  240
EVLRTHKRNH VGKECLGIIK HFQEKSGRGD DFYFNVQIDN DGCLRNVFWA DERSRTSYLK  300
FGDVMVFDVT YRTNKFKMPF SPFVGVNHHR QSVLFGGALL DDETEETFVW LFEQFLKCMN  360
FKPPQAIITD QDKAIRNAVK RVFPDARHRF CAWHIKKHVL EHIQPFRTRY KDFADTFYIW  420
IKSKSPKEFE EGWKILNEKY EIGEKGWLPT MYKDRRYWVK CYLKDTFFAG MTTSGRMAAR  480
RKSEEDEDFS TLNSQPALIT EHGIEKDAGR YYTRSIFQLF QREWHASLSL EHTKRQISDM  540
LVSYFVGSDR EQQTVEYDSE QQIVRCSCAK FETDGILCKH ALYILKKKKI KNLPKNYLLY  600
RWTIDARYHM AHKLVESEDA KASDHVVSAE EKWVARTMFH QIIRDADYSP SIFKEFIQTS  660
KIFMVRLRGE REVTENALIV ESSIQSQSTC EISHVELEPT QVTILDPACD KVNKGRPKSA  720
SRISSAIEKI KNYKCSECKR NGHNKTTCPE KKVLPKSFTA YGC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	584	594	LKKKKIKNLPK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-107	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Kalax.0013s0058.2.p