PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0013s0028.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MIKC_MADS
Protein Properties Length: 247aa    MW: 28281.1 Da    PI: 7.6263
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0013s0028.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.81.1e-31959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  Kalax.0013s0028.1.p  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
                         79***********************************************96 PP
2K-box93.92.7e-31861721399
                K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                          ++++ +qe+ kLk ++e Lq++qR+llGedL +L+ keL+q+e+qLe slk+iRs+K++++l+q+ +lq ke++l e+nkaL++kle
  Kalax.0013s0028.1.p  86 DTQNNYQEYLKLKGRVEALQKTQRNLLGEDLAQLNTKELEQIEHQLEISLKQIRSTKTQYMLDQLADLQLKEQNLLETNKALKQKLE 172
                          6899*********************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.207161IPR002100Transcription factor, MADS-box
CDDcd002651.28E-45278No hitNo description
SuperFamilySSF554553.92E-33281IPR002100Transcription factor, MADS-box
PRINTSPR004048.9E-33323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.3E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004048.9E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004048.9E-333859IPR002100Transcription factor, MADS-box
PfamPF014863.9E-2686171IPR002487Transcription factor, K-box
PROSITE profilePS5129715.53387177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS  60
PSIIKTLERY HQCSYSALEA SRPHFDTQNN YQEYLKLKGR VEALQKTQRN LLGEDLAQLN  120
TKELEQIEHQ LEISLKQIRS TKTQYMLDQL ADLQLKEQNL LETNKALKQK LEDNMETVQF  180
PQPWEEGAGH NNIPYIRLAT HSEASFYQPI GFNPTMQLGY NHAGGNEVDD ANQPHGIGGL  240
MPGWFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A5e-288917319103Developmental protein SEPALLATA 3
4ox0_B5e-288917319103Developmental protein SEPALLATA 3
4ox0_C5e-288917319103Developmental protein SEPALLATA 3
4ox0_D5e-288917319103Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6231637e-62AB623163.2 Pyrus pyrifolia var. culta PpMADS9-1 mRNA for MADS-box protein, complete cds.
GenBankAJ0016817e-62AJ001681.1 Malus domestica mRNA for MADS box protein MdMADS8.
GenBankKC4152377e-62KC415237.1 Malus domestica cultivar Fuji Beni Shogun MADS8-2 mRNA, complete cds.
GenBankKC4152387e-62KC415238.1 Malus domestica cultivar Fuji Beni Shogun MADS8-1 mRNA, complete cds.
GenBankKP1640027e-62KP164002.1 Pyrus pyrifolia clone PpSEP1-1 SEP1-like MADS-box protein mRNA, complete cds.
GenBankKP1640167e-62KP164016.1 Pyrus pyrifolia clone PpSEP1-2 SEP1-like MADS-box protein mRNA, complete cds.
GenBankU789477e-62U78947.1 Malus domestica MADS-box protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021592871.11e-118developmental protein SEPALLATA 1-like
SwissprotQ8LLR21e-109MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLA0A2C9UL861e-117A0A2C9UL86_MANES; Uncharacterized protein
STRINGcassava4.1_033888m1e-118(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.11e-98MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]