PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0012s0251.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 367aa    MW: 41402.6 Da    PI: 8.4804
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0012s0251.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.11.6e-164491148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT+ Ed ll ++++ +G g+W++ +++ g+ R++k+c++rw +yl
  Kalax.0012s0251.1.p 44 RGPWTPREDTLLTNYIQTHGEGNWRSLPKKAGLLRCGKSCRLRWMNYL 91
                         89******************************99************97 PP
2Myb_DNA-binding49.21.2e-1597142148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg+ + +Ed+l+++++ +lG++ W++Ia +++ gRt++++k++w+++l
  Kalax.0012s0251.1.p  97 RGNISSDEDDLIIRLHILLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 142
                          78999*****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.9553991IPR017930Myb domain
SuperFamilySSF466893.82E-2941138IPR009057Homeodomain-like
SMARTSM007175.6E-134393IPR001005SANT/Myb domain
PfamPF002495.9E-154491IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.1E-244598IPR009057Homeodomain-like
CDDcd001671.41E-104691No hitNo description
PROSITE profilePS5129425.4392146IPR017930Myb domain
SMARTSM007175.4E-1596144IPR001005SANT/Myb domain
PfamPF002491.1E-1397142IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-2599146IPR009057Homeodomain-like
CDDcd001675.82E-11101142No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MPMVLGKCVL WRCCVHLAFA PIISSLRSLS MGRAPCCSKV GLHRGPWTPR EDTLLTNYIQ  60
THGEGNWRSL PKKAGLLRCG KSCRLRWMNY LRPDIKRGNI SSDEDDLIIR LHILLGNRWS  120
LIAGRLPGRT DNEIKNYWNT HLSKKLRLQG IDPDTHKPLP HGSSESNSRK KKNKKGKLSS  180
ASMTNNNNGQ INKKQQQALT QKRNKDSRDA DEKKNRHTIH LPKPVRVKSF SMLPRNESFV  240
SMTSAASDRV INNNVGDDDN NNNNNGTGGA RFFIGDDDCG DYKMMMMRGE DGSDDLDLGF  300
DRHQYQLCAG DEDDFISGEH NLDKLYNEYL QVLKTTNEVA DNNAATTDDD HELLDQLDSF  360
AESFLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-244214625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024176263.11e-104myb-related protein 308-like
TrEMBLA0A2P6SIK91e-103A0A2P6SIK9_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004306648.11e-101(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.15e-70myb domain protein 5