PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0012s0220.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 554aa    MW: 60237 Da    PI: 8.5506
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0012s0220.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000167393323
                         ETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                         C++C+k F r  nL+ H r H
  Kalax.0012s0220.2.p 73 CEICNKGFQRDQNLQLHRRGH 93
                         *******************88 PP
2zf-C2H210.90.0014148170123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC +C+k +  ks+ k H + +
  Kalax.0012s0220.2.p 148 WKCDKCPKKYAVKSDWKAHSKIC 170
                          58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.35E-77093No hitNo description
Gene3DG3DSA:3.30.160.602.6E-57093IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.117193IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8247193IPR007087Zinc finger, C2H2
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
SMARTSM00355110113143IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.9E-4136169IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.35E-7143168No hitNo description
SMARTSM0035565148175IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MMSQGLSPVP SSILGFIEDQ IQNPDSSNTP ATQPSASSSA LKRKRNLPGT PDPDSEVVAL  60
SPTSLMATNR FLCEICNKGF QRDQNLQLHR RGHNLPWKLK QRSNKEVVKK KVYICPEKSC  120
VHHDPSRALG DLTGIKKHFS RKHGEKKWKC DKCPKKYAVK SDWKAHSKIC GTKEHKCDCG  180
TLFSRKDSFI THRAFCTAVV DQSGSRFASS VAAGTNNPLS LRNDFLSGNL GIPQGVDTNQ  240
FSGGGFYPEL STSFHSYGHV SNSTDGSKSV RHIIPQWLDQ HPALNASAHL LMGNLAGNLS  300
HELLLQNAGQ VNLFGSSSSS QAPWLNKCTD QSAFGGANMS SLDQILGNTS GGSSGMMQVK  360
REDEILSNAD FVENMTTSLY NPNNLSHQQQ QAITSNQSAA DQFLSSFYGR SNSNSLGLIS  420
SGASNGQVSF AGNNNNGFVE NSSFCIISSP FSRPPPPVIK DSDNTNASLN HHHQMLLHEA  480
VAAGRAKPPE TNPNAIKQQQ AESSQTRDFL GVGRNEIMRE EQFQLAMVSD QQFGSAAAGA  540
ESDMSHYNQQ WKH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-29144209367Zinc finger protein JACKDAW
5b3h_F3e-29144209367Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.11e-97C2H2-like zinc finger protein