PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0012s0188.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 250aa MW: 28636.1 Da PI: 8.6679 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.7 | 8.6e-16 | 8 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed ll ++v ++G ++W+ +a+ g++Rt+k+c++rw +yl Kalax.0012s0188.2.p 8 KGPWTEQEDFLLENVVGLFGDRRWDFVAKVSGLNRTGKSCRLRWVNYL 55 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.5 | 4.8e-16 | 61 | 106 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ E+ l +++++++G++ W++Iar+++ gRt++++k++w++++ Kalax.0012s0188.2.p 61 RGKMSSTEERLVIELHAKWGNR-WSRIARRLP-GRTDNEIKNFWRTHM 106 899*******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.485 | 3 | 55 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.11E-27 | 6 | 102 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-14 | 7 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.6E-15 | 8 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-18 | 9 | 62 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.52E-9 | 10 | 55 | No hit | No description |
PROSITE profile | PS51294 | 25.893 | 56 | 110 | IPR017930 | Myb domain |
SMART | SM00717 | 3.3E-15 | 60 | 108 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-14 | 61 | 105 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-22 | 63 | 109 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.02E-10 | 63 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MQQEDTRKGP WTEQEDFLLE NVVGLFGDRR WDFVAKVSGL NRTGKSCRLR WVNYLHPGLK 60 RGKMSSTEER LVIELHAKWG NRWSRIARRL PGRTDNEIKN FWRTHMRKKA QERKRVNYLS 120 TTSSESSPSS SNHTQGSRCD SGKESFSDTG GNATVKEMGK KQTDEEGERI KVDDIWKDID 180 ISKDTITPLN DGYNQGLCNY SCTPLVSPLW EFCPDSLWRM DEEDSKMLTP SNNYLLACCE 240 AGKSRLRGS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-25 | 8 | 110 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 5e-25 | 8 | 110 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 5e-25 | 8 | 110 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 2e-25 | 8 | 110 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 2e-25 | 8 | 110 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007016524.2 | 1e-102 | PREDICTED: transcription factor MYB59 isoform X1 | ||||
Swissprot | Q9LX82 | 1e-86 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | A0A061GXJ9 | 1e-101 | A0A061GXJ9_THECC; Myb domain protein 59 isoform 2 | ||||
STRING | VIT_06s0004g04140.t01 | 1e-100 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.1 | 6e-80 | myb domain protein 48 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0012s0188.2.p |
Publications ? help Back to Top | |||
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