PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0012s0162.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TALE
Protein Properties Length: 535aa    MW: 59460.1 Da    PI: 5.4537
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0012s0162.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox253.2e-084544911954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          F +  ++yp+ +++  LA k gLt +qV++WF N R +
  Kalax.0012s0162.1.p 454 FDNflHPYPKDSDKHMLAIKSGLTRSQVSNWFINARVR 491
                          665569******************************88 PP
2BELL60.44.1e-20324393272
                 BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          ++e++ kk +L  ll++Vd+ Y+q+   ++ v+s+F+  +g ++ +++t++ l+++S+ +++Lk++i+ qi
  Kalax.0012s0162.1.p 324 KREVRDKKKQLTALLNMVDEGYSQCLRAVHSVVSAFHPLTGSDP-EVHTRFVLQTTSFLYKSLKERISAQI 393
                          6899****************************************.************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.4E-13257391IPR006563POX domain
PfamPF075261.5E-19265390IPR006563POX domain
PROSITE profilePS5007110.835432495IPR001356Homeobox domain
CDDcd000862.79E-10435496No hitNo description
Gene3DG3DSA:1.10.10.602.7E-25435506IPR009057Homeodomain-like
SMARTSM003891.5E-5435499IPR001356Homeobox domain
SuperFamilySSF466895.99E-15437503IPR009057Homeodomain-like
PfamPF059203.2E-15452491IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MHFSSYEPFQ ENEMFTNTPL ERPGADNNTS LGISATYPDH LPSAFDLNNQ QNQIMSGYPV  60
FSAIQGEPIG DLLAISTHPV YADSDAMLAG PLLDGEYVSE EQFGEGTLVS ATVLASLLTS  120
RGCFYQNVDD PTLSGPGRAF GYSEDPGTSS VDRSCNNQMH GDTGDGVWLQ PPNPIFYQES  180
WAATYPCNNL AMFNNELSLS LATSQPSRIC QSFIQDQCSE LSRSGVTYIH DSERGTEQSS  240
SPMTNDWSLT YPYCSTSQPS LASSGSSYLK AVQQLLAKLS RFALENVDLG SYSAGSPGNV  300
ASISGEYSES DGGESQEATL SPQKREVRDK KKQLTALLNM VDEGYSQCLR AVHSVVSAFH  360
PLTGSDPEVH TRFVLQTTSF LYKSLKERIS AQILNLKAAD MQSDSIQEQE RAFESSFIQK  420
QWALQQLKRK EHQLWRPQRG LPERSISVLR AWMFDNFLHP YPKDSDKHML AIKSGLTRSQ  480
VSNWFINARV RLWKPMIEEM YAEINRRKAH RKGHLGENSV RGHSSMGNQR FLGE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015573161.11e-130homeobox protein ATH1
RefseqXP_015573162.11e-130homeobox protein ATH1
RefseqXP_015573163.11e-130homeobox protein ATH1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.13e-86homeobox gene 1