PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0012s0111.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | HB-PHD | ||||||||
Protein Properties | Length: 623aa MW: 70144.7 Da PI: 7.5121 | ||||||||
Description | HB-PHD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.3 | 2.9e-09 | 397 | 440 | 10 | 53 |
HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 +e L ++F+++ ps++ + L+k lgL+ ++V WF+N R+ Kalax.0012s0111.1.p 397 VAVEKLRQVFAEDELPSKSVKDNLSKLLGLSPEKVNKWFKNARY 440 56899*************************************97 PP | |||||||
2 | PHD | 33.7 | 8.1e-12 | 122 | 176 | 1 | 50 |
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCke 50 +C+ C+ + +++++lCdg C+ +fH+kCl+++l+++++p + w+C+ C++ Kalax.0012s0111.1.p 122 ICAKCKLreAFPDNDIILCDGiCNCAFHQKCLDPPLSTDNIPPEdqGWFCKFCQC 176 588888854455********88*******************99999*******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57903 | 3.1E-13 | 114 | 179 | IPR011011 | Zinc finger, FYVE/PHD-type |
Gene3D | G3DSA:3.30.40.10 | 4.0E-11 | 118 | 177 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
PROSITE profile | PS50016 | 10.077 | 120 | 177 | IPR019787 | Zinc finger, PHD-finger |
Pfam | PF00628 | 4.4E-9 | 122 | 176 | IPR019787 | Zinc finger, PHD-finger |
SMART | SM00249 | 1.0E-7 | 122 | 175 | IPR001965 | Zinc finger, PHD-type |
CDD | cd15504 | 9.55E-28 | 123 | 174 | No hit | No description |
PROSITE pattern | PS01359 | 0 | 123 | 174 | IPR019786 | Zinc finger, PHD-type, conserved site |
Gene3D | G3DSA:1.10.10.60 | 2.5E-11 | 380 | 439 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 12.082 | 385 | 445 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.4E-10 | 387 | 449 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.23E-10 | 387 | 451 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.46E-9 | 388 | 440 | No hit | No description |
Pfam | PF00046 | 8.9E-7 | 397 | 440 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 623 aa Download sequence Send to blast |
MLPAEEDVVV ADVSKRRRKR RRQGKKVASD DAARLQRRAR YLLIKIKLEQ NLIDAYAGEG 60 WKGQSREKIR PEKELQRAYK QILKCKLGIR DAIRQLESLG SVGSMEDSLI APDGSVHHEH 120 IICAKCKLRE AFPDNDIILC DGICNCAFHQ KCLDPPLSTD NIPPEDQGWF CKFCQCRMDI 180 IDVMNAHLGT HISMGSNWQD IFSEEASIVD GADDPPHIGE VQWPSDDSND DDYDPEKKEC 240 SYSTGLMEAE DSSSLSRCDS VSISWSFEEE AFSDLQGSQH SGMPPVMNSA CFQSCADSAG 300 TMTDMTIEGC RQRRTVDYKK LYIEMFGKDA PGNEQLSEDE DWGPGKRIRK EKESYAASTL 360 MTLFSSENID PDDAVQAKEE HHQGAHSRRP LFRIPPVAVE KLRQVFAEDE LPSKSVKDNL 420 SKLLGLSPEK VNKWFKNARY LALRNRKMGS SIGCPNPIGT CSNESPLNEQ CVENKVICGD 480 TLNGGSSSSL VNTSMIKQSG YRARSLSNLR KKKRHRRTLL GLSSCNTTKV MMDFNENVSL 540 KQQLQLLKSA SKKRIWNHLD FKEGFNRRPT RVEMEMERLC TIKCRVDGML ENLSVLLKQQ 600 KSGTPKAEAV VYVPIAQVKE KF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 15 | 21 | RRRKRRR |
2 | 17 | 21 | RKRRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002269263.1 | 0.0 | PREDICTED: pathogenesis-related homeodomain protein | ||||
Refseq | XP_010656753.1 | 0.0 | PREDICTED: pathogenesis-related homeodomain protein | ||||
TrEMBL | D7UBI5 | 0.0 | D7UBI5_VITVI; Uncharacterized protein | ||||
STRING | VIT_11s0103g00650.t01 | 0.0 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29940.2 | 1e-88 | pathogenesis related homeodomain protein A |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0012s0111.1.p |