PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0012s0098.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 265aa    MW: 29844.5 Da    PI: 9.2896
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0012s0098.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.67.1e-3076134259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           D ++WrKYGqK++kgs++pr+YYrC+++ gC++kk+vers++d + +++tY+++Hnh+
  Kalax.0012s0098.1.p  76 ADSWSWRKYGQKPIKGSPYPRGYYRCSTSkGCSAKKQVERSRTDASKLIVTYTSTHNHP 134
                          69************************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.7E-3166136IPR003657WRKY domain
SuperFamilySSF1182901.44E-2573136IPR003657WRKY domain
SMARTSM007742.4E-3475135IPR003657WRKY domain
PROSITE profilePS5081131.28477136IPR003657WRKY domain
PfamPF031062.3E-2577134IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MILRCDIISK QKQKQLQHSG WWSTRIRVGR SVMEGSPQPS PETQAAKKGK PLHKTVVTLK  60
VVAASCEKQK NEGPPADSWS WRKYGQKPIK GSPYPRGYYR CSTSKGCSAK KQVERSRTDA  120
SKLIVTYTST HNHPGPNLTT QNREEIQEPS TAEIGAEPKV EKPAAADEQR QNNTENFNYM  180
EPRQDVTGHI DRSPFSVVLD STHESLGVLF HEKPISHPPI RTSPKQESDG YDFFDELEEL  240
PMSLPFTSFT KSSFYDDRIL VRPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-20761361779Disease resistance protein RRS1
5w3x_D2e-20761361779Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002270750.35e-76PREDICTED: probable WRKY transcription factor 65
TrEMBLD7U2J01e-74D7U2J0_VITVI; Uncharacterized protein
STRINGVIT_07s0005g01520.t012e-75(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.11e-35WRKY DNA-binding protein 35