PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kalax.0012s0070.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 262aa MW: 30255.1 Da PI: 7.8396 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 93.6 | 8.9e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr+g+ KKA+E+SvLCdaeva+iifs +gk++eys+ Kalax.0012s0070.1.p 9 KRIENKINRQVTFSKRRTGLVKKAHEISVLCDAEVALIIFSGKGKMFEYST 59 79***********************************************96 PP | |||||||
2 | K-box | 99 | 6.9e-33 | 84 | 179 | 5 | 100 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 g s ++ ++e+ + e+ kLk+++e Lqr++Rh lGed++sLs++eLq+Le+qL+++lk++R++Kn+l++e+i+elqkke+++qe+n+ L Kalax.0012s0070.1.p 84 MGASDHSPQEENISMEYHKLKSKLELLQRSHRHCLGEDVDSLSMRELQNLEHQLDTALKRVRARKNQLMHESISELQKKERAMQEQNNLL 173 4455788899******************************************************************************** PP K-box 95 rkklee 100 +k+++e Kalax.0012s0070.1.p 174 TKRVKE 179 *99986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.9E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.043 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.62E-33 | 2 | 81 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 8.19E-41 | 2 | 79 | No hit | No description |
PRINTS | PR00404 | 2.1E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.2E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 8.0E-29 | 89 | 177 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 16.369 | 93 | 183 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 262 aa Download sequence Send to blast |
MGRGRVELKR IENKINRQVT FSKRRTGLVK KAHEISVLCD AEVALIIFSG KGKMFEYSTD 60 SCMEKILERY ERHSYAERQH YQQMGASDHS PQEENISMEY HKLKSKLELL QRSHRHCLGE 120 DVDSLSMREL QNLEHQLDTA LKRVRARKNQ LMHESISELQ KKERAMQEQN NLLTKRVKEK 180 EKTLMGQQEE AHPHPWAVHH EHHHNHGATS SSSFHLSQPV PSLNAAHAHR GEADDDGRMS 240 PNELDLTLEP IYSYHLGCFA A* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 5e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 5e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 5e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 5e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001268210.1 | 1e-114 | apetala1 | ||||
Swissprot | Q6E6S7 | 1e-116 | AP1_VITVI; Agamous-like MADS-box protein AP1 | ||||
TrEMBL | A0A2H4L6J3 | 1e-109 | A0A2H4L6J3_CERJA; AP1 | ||||
STRING | VIT_01s0011g00100.t01 | 1e-115 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69120.1 | 1e-102 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kalax.0012s0070.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|