PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kalax.0011s0166.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 348aa MW: 38052.5 Da PI: 6.792 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.3 | 1e-19 | 30 | 80 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 +y GVr+++ +grWvAeI+d ++ r +lg+f+tae+Aa+a+++a+++l+g+ Kalax.0011s0166.1.p 30 KYVGVRQRP-SGRWVAEIKD----SlQKVRLWLGTFDTAEDAARAYDEAARSLRGA 80 8********.7*********....4456*************************995 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.88E-20 | 30 | 87 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.3E-36 | 30 | 93 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-29 | 30 | 87 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.05E-31 | 30 | 87 | No hit | No description |
PROSITE profile | PS51032 | 20.916 | 30 | 87 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.3E-13 | 30 | 79 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-8 | 31 | 42 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-8 | 53 | 69 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 348 aa Download sequence Send to blast |
MNRQRNMGVP SQPTIIKSAK KKASSRGHHK YVGVRQRPSG RWVAEIKDSL QKVRLWLGTF 60 DTAEDAARAY DEAARSLRGA NARTNFELPP QMKNGRGGFL RPLTEWAEPF SFELECGTSD 120 DARGGLIAAL KAKLLDGKGA DGAVSLPHMS GSSRIKANHD TGLLRKHVDG PKMRQQTTDR 180 IAQSIIINPN PPTLVQDSCL LKFSKSDMPI DHDDHDDLIA SAAAQWADQA NHTAQLENVV 240 WPLADPWNNT QMTMSHFHQE ESLFLSHSNG NSSGSSAGWP LAVTTDTSAQ FSYHNQCDPM 300 ELAPSVIDAA CIWPEQQFAQ SENNNAWGCS ASGSFDQLLY LSSMLLG* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-16 | 28 | 95 | 12 | 80 | Ethylene-responsive transcription factor ERF096 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G19790.1 | 9e-18 | related to AP2 11 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kalax.0011s0166.1.p |