PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0011s0117.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | GATA | ||||||||
Protein Properties | Length: 159aa MW: 16665.8 Da PI: 9.8825 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 57.8 | 1.5e-18 | 43 | 77 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs Cgt+kTplWR gp g+k+LCnaCG++ rk+++ Kalax.0011s0117.1.p 43 CSDCGTSKTPLWRGGPAGPKSLCNACGIRSRKRRR 77 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 5 | 1 | 26 | No hit | No description |
SMART | SM00401 | 6.8E-13 | 37 | 89 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 8.08E-13 | 38 | 76 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 3.6E-15 | 41 | 76 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.85E-13 | 42 | 92 | No hit | No description |
PROSITE profile | PS50114 | 12.163 | 43 | 73 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.0E-16 | 43 | 77 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 43 | 68 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MFDQKGSEIE EVKSNNSSTI TAALACDASS SSGSEGQPIK KTCSDCGTSK TPLWRGGPAG 60 PKSLCNACGI RSRKRRRALL GLTKPEEKRS KKTTGSTASN GGVTGVSGCS GEEKLTSHQK 120 LTGLTWQRST AEKYRRVLGE EEQAAVLLMA MAYGSVFA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 72 | 76 | RKRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00554 | DAP | Transfer from AT5G49300 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021291147.1 | 9e-45 | GATA transcription factor 15-like | ||||
Swissprot | Q9FJ10 | 6e-34 | GAT16_ARATH; GATA transcription factor 16 | ||||
TrEMBL | A0A1R3G695 | 2e-41 | A0A1R3G695_COCAP; Zinc finger, GATA-type | ||||
TrEMBL | A0A1R3GJY5 | 2e-41 | A0A1R3GJY5_9ROSI; Zinc finger, GATA-type | ||||
STRING | Lus10016849 | 1e-42 | (Linum usitatissimum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49300.1 | 2e-36 | GATA transcription factor 16 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0011s0117.1.p |
Publications ? help Back to Top | |||
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