PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0011s0018.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ZF-HD | ||||||||
Protein Properties | Length: 238aa MW: 26229.1 Da PI: 7.669 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 98.5 | 5e-31 | 47 | 103 | 3 | 60 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 vrY+eClkNhA+ +Ggha+DGCgEf+++ g++gt ++++CaAC CHRnFHR+e++ e Kalax.0011s0018.1.p 47 VVRYRECLKNHAVGIGGHALDGCGEFIAA-GDDGTLESMTCAACSCHRNFHRKETDGE 103 69**************************9.999*********************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 7.5E-29 | 48 | 100 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.6E-28 | 49 | 99 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.979 | 50 | 99 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-17 | 53 | 101 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 9.45E-18 | 161 | 236 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.1E-29 | 164 | 236 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.6E-26 | 175 | 232 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MDQFGHNHDH GNEIEEEEIV PVHESLTNLR RLNVSGEGGS SGGRRRVVRY RECLKNHAVG 60 IGGHALDGCG EFIAAGDDGT LESMTCAACS CHRNFHRKET DGESAFHPNA QFSPYYHHRS 120 PPPGFLHMAL PPSVAEGRHR QPLALQSREE LDDMSNPSSS GGGGGGGSTP GGGNKKRFRT 180 KFTAEQKERM MELAERLGWR LQRQDDALVQ QFCLDNGVSR QVLKVWMHNN KNTFGKK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 3e-26 | 176 | 233 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein. Putative transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010266504.1 | 2e-74 | PREDICTED: zinc-finger homeodomain protein 1-like | ||||
Swissprot | Q9SB61 | 5e-66 | ZHD2_ARATH; Zinc-finger homeodomain protein 2 | ||||
TrEMBL | A0A1U8AKJ6 | 4e-73 | A0A1U8AKJ6_NELNU; zinc-finger homeodomain protein 1-like | ||||
STRING | XP_010266504.1 | 7e-74 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 9e-59 | homeobox protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0011s0018.1.p |
Publications ? help Back to Top | |||
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