PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0010s0020.6.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | GATA | ||||||||
Protein Properties | Length: 237aa MW: 27313.3 Da PI: 8.1161 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 42.9 | 6.9e-14 | 56 | 89 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C+tt+ p+WR+ p+g + +C CGl+ rk+g+ Kalax.0010s0020.6.p 56 CAHCNTTQAPMWRKTPSGAR-ICDFCGLRLRKRGM 89 ********************.***********996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 15.446 | 50 | 103 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 2.1E-9 | 50 | 99 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.9E-13 | 51 | 100 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 4.18E-11 | 52 | 103 | No hit | No description |
CDD | cd00202 | 8.17E-10 | 55 | 98 | No hit | No description |
Pfam | PF00320 | 1.9E-10 | 56 | 88 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS51525 | 14.379 | 155 | 236 | IPR027353 | NET domain |
Pfam | PF17035 | 2.0E-15 | 165 | 226 | IPR027353 | NET domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MTRHHHLARI GGTNNKQDFI FLCKALLLMI LFQGYLERPR KFRSMIDILS QNGQSCAHCN 60 TTQAPMWRKT PSGARICDFC GLRLRKRGMQ LSPQKKYQTI TGSLQEADNK DEEVTDDLKF 120 LLGNDRLQVE QTMKKYADEI SASLGLLEQQ LEGFLDNVTS KCRSMTFFEK QSLWSLIKDL 180 PPENFDRVVE IIKRSRGLDQ RDENDILVDL EDTDNAVLWR LYYYAKAVEN ARNLVG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010660834.1 | 8e-49 | PREDICTED: GATA transcription factor 7 | ||||
Refseq | XP_010660835.1 | 8e-49 | PREDICTED: GATA transcription factor 7 | ||||
TrEMBL | D7TWF4 | 2e-47 | D7TWF4_VITVI; Uncharacterized protein | ||||
STRING | VIT_14s0066g00150.t01 | 3e-48 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06740.1 | 1e-07 | GATA transcription factor 15 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0010s0020.6.p |