PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0010s0020.5.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GATA
Protein Properties Length: 380aa    MW: 42262.7 Da    PI: 5.6204
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0010s0020.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA41.91.3e-13199232135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C++C+tt+ p+WR+ p+g + +C  CGl+ rk+g+
  Kalax.0010s0020.5.p 199 CAHCNTTQAPMWRKTPSGAR-ICDFCGLRLRKRGM 232
                          ********************.***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.1E-9193242IPR000679Zinc finger, GATA-type
PROSITE profilePS5011415.446193246IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.5E-13194243IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577169.03E-11195246No hitNo description
CDDcd002021.81E-9198241No hitNo description
PfamPF003203.6E-10199231IPR000679Zinc finger, GATA-type
PROSITE profilePS5152514.379298379IPR027353NET domain
PfamPF170354.4E-15308369IPR027353NET domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MSVSPSSDGP KKEVPDYIGF FTHELQDLMS GADVAGDDFF PLLGFKSDAA GREMRGDDVN  60
ESLGGGLKKP GSLFCDGLGG ELSDYKKEKL KGLLKQSVSV FTQEVDQMVE VVLATCQLQH  120
RLRSKGTASS SQGSASGNNE RARSSEKMKR GKFTSPKTSD APAPVRPPAN IESVEEGYLE  180
RPRKFRSMID ILSQNGQSCA HCNTTQAPMW RKTPSGARIC DFCGLRLRKR GMQLSPQKKY  240
QTITGSLQEA DNKDEEVTDD LKFLLGNDRL QVEQTMKKYA DEISASLGLL EQQLEGFLDN  300
VTSKCRSMTF FEKQSLWSLI KDLPPENFDR VVEIIKRSRG LDQRDENDIL VDLEDTDNAV  360
LWRLYYYAKA VENARNLVG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45170.12e-07GATA transcription factor 14