PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0010s0020.4.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GATA
Protein Properties Length: 273aa    MW: 30815.9 Da    PI: 8.3521
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0010s0020.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA42.68.5e-1492125135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C++C+tt+ p+WR+ p+g + +C  CGl+ rk+g+
  Kalax.0010s0020.4.p  92 CAHCNTTQAPMWRKTPSGAR-ICDFCGLRLRKRGM 125
                          ********************.***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.1E-986135IPR000679Zinc finger, GATA-type
PROSITE profilePS5011415.44686139IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.4E-1387136IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577165.23E-1188139No hitNo description
CDDcd002022.00E-991134No hitNo description
PfamPF003202.3E-1092124IPR000679Zinc finger, GATA-type
PROSITE profilePS5152514.379191272IPR027353NET domain
PfamPF170352.6E-15201262IPR027353NET domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MVEVVLATCQ LQHRLRSKGT ASSSQGSASG NNERARSSEK MKRGKFTSPK TSDAPAPVRP  60
PANIESVEEG YLERPRKFRS MIDILSQNGQ SCAHCNTTQA PMWRKTPSGA RICDFCGLRL  120
RKRGMQLSPQ KKYQTITGSL QEADNKDEEV TDDLKFLLGN DRLQVEQTMK KYADEISASL  180
GLLEQQLEGF LDNVTSKCRS MTFFEKQSLW SLIKDLPPEN FDRVVEIIKR SRGLDQRDEN  240
DILVDLEDTD NAVLWRLYYY AKAVENARNL VG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45170.11e-07GATA transcription factor 14