PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0010s0020.3.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GATA
Protein Properties Length: 295aa    MW: 33149.4 Da    PI: 8.5717
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0010s0020.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA42.49.5e-14114147135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C++C+tt+ p+WR+ p+g + +C  CGl+ rk+g+
  Kalax.0010s0020.3.p 114 CAHCNTTQAPMWRKTPSGAR-ICDFCGLRLRKRGM 147
                          ********************.***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011415.446108161IPR000679Zinc finger, GATA-type
SMARTSM004012.1E-9108157IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.1E-13109158IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577166.18E-11110161No hitNo description
CDDcd002022.64E-9113156No hitNo description
PfamPF003202.6E-10114146IPR000679Zinc finger, GATA-type
PROSITE profilePS5152514.379213294IPR027353NET domain
PfamPF170352.9E-15223284IPR027353NET domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MVEVVLATCQ LQHRLRSKGT ASSSQGSASG NNERARSSEK MKRGKFTSPK TSDAPAPVRP  60
PANIESVEEE RSRAVRTGGT TGWTTGELST QGYLERPRKF RSMIDILSQN GQSCAHCNTT  120
QAPMWRKTPS GARICDFCGL RLRKRGMQLS PQKKYQTITG SLQEADNKDE EVTDDLKFLL  180
GNDRLQVEQT MKKYADEISA SLGLLEQQLE GFLDNVTSKC RSMTFFEKQS LWSLIKDLPP  240
ENFDRVVEII KRSRGLDQRD ENDILVDLED TDNAVLWRLY YYAKAVENAR NLVG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010660834.19e-49PREDICTED: GATA transcription factor 7
RefseqXP_010660835.19e-49PREDICTED: GATA transcription factor 7
TrEMBLD7TWF42e-47D7TWF4_VITVI; Uncharacterized protein
STRINGVIT_14s0066g00150.t014e-48(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.13e-07GATA transcription factor 15