PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0010s0020.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | GATA | ||||||||
Protein Properties | Length: 380aa MW: 42262.7 Da PI: 5.6204 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 41.9 | 1.3e-13 | 199 | 232 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C+tt+ p+WR+ p+g + +C CGl+ rk+g+ Kalax.0010s0020.2.p 199 CAHCNTTQAPMWRKTPSGAR-ICDFCGLRLRKRGM 232 ********************.***********996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 2.1E-9 | 193 | 242 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 15.446 | 193 | 246 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 4.5E-13 | 194 | 243 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 9.03E-11 | 195 | 246 | No hit | No description |
CDD | cd00202 | 1.81E-9 | 198 | 241 | No hit | No description |
Pfam | PF00320 | 3.6E-10 | 199 | 231 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS51525 | 14.379 | 298 | 379 | IPR027353 | NET domain |
Pfam | PF17035 | 4.4E-15 | 308 | 369 | IPR027353 | NET domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 380 aa Download sequence Send to blast |
MSVSPSSDGP KKEVPDYIGF FTHELQDLMS GADVAGDDFF PLLGFKSDAA GREMRGDDVN 60 ESLGGGLKKP GSLFCDGLGG ELSDYKKEKL KGLLKQSVSV FTQEVDQMVE VVLATCQLQH 120 RLRSKGTASS SQGSASGNNE RARSSEKMKR GKFTSPKTSD APAPVRPPAN IESVEEGYLE 180 RPRKFRSMID ILSQNGQSCA HCNTTQAPMW RKTPSGARIC DFCGLRLRKR GMQLSPQKKY 240 QTITGSLQEA DNKDEEVTDD LKFLLGNDRL QVEQTMKKYA DEISASLGLL EQQLEGFLDN 300 VTSKCRSMTF FEKQSLWSLI KDLPPENFDR VVEIIKRSRG LDQRDENDIL VDLEDTDNAV 360 LWRLYYYAKA VENARNLVG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G45170.1 | 2e-07 | GATA transcription factor 14 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0010s0020.2.p |