PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0010s0020.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GATA
Protein Properties Length: 402aa    MW: 44596.2 Da    PI: 5.9467
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0010s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA41.81.4e-13221254135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C++C+tt+ p+WR+ p+g + +C  CGl+ rk+g+
  Kalax.0010s0020.1.p 221 CAHCNTTQAPMWRKTPSGAR-ICDFCGLRLRKRGM 254
                          ********************.***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.1E-9215264IPR000679Zinc finger, GATA-type
PROSITE profilePS5011415.446215268IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.9E-13216265IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577169.98E-11217268No hitNo description
CDDcd002022.04E-9220263No hitNo description
PfamPF003203.9E-10221253IPR000679Zinc finger, GATA-type
PROSITE profilePS5152514.379320401IPR027353NET domain
PfamPF170354.8E-15330391IPR027353NET domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MSVSPSSDGP KKEVPDYIGF FTHELQDLMS GADVAGDDFF PLLGFKSDAA GREMRGDDVN  60
ESLGGGLKKP GSLFCDGLGG ELSDYKKEKL KGLLKQSVSV FTQEVDQMVE VVLATCQLQH  120
RLRSKGTASS SQGSASGNNE RARSSEKMKR GKFTSPKTSD APAPVRPPAN IESVEEERSR  180
AVRTGGTTGW TTGELSTQGY LERPRKFRSM IDILSQNGQS CAHCNTTQAP MWRKTPSGAR  240
ICDFCGLRLR KRGMQLSPQK KYQTITGSLQ EADNKDEEVT DDLKFLLGND RLQVEQTMKK  300
YADEISASLG LLEQQLEGFL DNVTSKCRSM TFFEKQSLWS LIKDLPPENF DRVVEIIKRS  360
RGLDQRDEND ILVDLEDTDN AVLWRLYYYA KAVENARNLV G*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.14e-07GATA transcription factor 15