PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0010s0013.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 290aa    MW: 32756.1 Da    PI: 5.0223
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0010s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.52.6e-121461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT +Ed +l   +   G ++W+t+++  g+ R++k+c++rw +yl
  Kalax.0010s0013.1.p 14 RGPWTIDEDHKLMSFILGNGIHCWRTVPKLAGLLRCGKSCRLRWINYL 61
                         89******************************99************97 PP
2Myb_DNA-binding51.13.1e-1667110146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg +T+ E+++++++++ lG++ W++Ia+++  gRt++++k++w++
  Kalax.0010s0013.1.p  67 RGGFTEAEEDQIIELHAALGNR-WSKIASHFD-GRTDNEIKNHWNT 110
                          788*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-19564IPR009057Homeodomain-like
PROSITE profilePS5129412.722961IPR017930Myb domain
SuperFamilySSF466893.74E-2711108IPR009057Homeodomain-like
SMARTSM007175.2E-51363IPR001005SANT/Myb domain
PfamPF002492.5E-101461IPR001005SANT/Myb domain
CDDcd001675.57E-41661No hitNo description
PROSITE profilePS5129425.17662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.7E-2565117IPR009057Homeodomain-like
SMARTSM007171.9E-1566114IPR001005SANT/Myb domain
PfamPF002491.2E-1467110IPR001005SANT/Myb domain
CDDcd001675.59E-1170110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGRKPCCDKV GLKRGPWTID EDHKLMSFIL GNGIHCWRTV PKLAGLLRCG KSCRLRWINY  60
LRPDLKRGGF TEAEEDQIIE LHAALGNRWS KIASHFDGRT DNEIKNHWNT RIKKRLKEMG  120
VDLASHKSAA KPKQTGNEQP KDQMDADSDS TKEQPAQTAI REETPKVTNA DTQHEGSEDV  180
VVDNNKLSQF EHPGNDDDLL SDYDIFNGSL EVLEHWLNED SLELDGRSSS TSFSLNAPTS  240
ETSTGLHEAQ HSDSVIRDDN DPAYLHQWFD EMDSFFGFSS SLDITNHYE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-26121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00510DAPTransfer from AT5G14340Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023895144.13e-92myb-related protein 315
SwissprotQ9C7U75e-68MYB20_ARATH; Transcription factor MYB20
TrEMBLA0A2N9EVI38e-89A0A2N9EVI3_FAGSY; Uncharacterized protein
STRINGPOPTR_0001s36220.11e-87(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.13e-83myb domain protein 40
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]