PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0009s0179.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | SBP | ||||||||
Protein Properties | Length: 228aa MW: 25594.4 Da PI: 6.6686 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 46.6 | 9.4e-15 | 184 | 223 | 3 | 42 |
SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE CS SBP 3 qvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrf 42 q egC+adl+ ak+yh+rhkvCe+hsk+++v++ gl+ rf Kalax.0009s0179.1.p 184 QTEGCAADLTIAKQYHQRHKVCEFHSKTSTVIAGGLTLRF 223 89***********************************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.7E-14 | 177 | 224 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 13.879 | 180 | 227 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.88E-13 | 181 | 224 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.3E-9 | 184 | 223 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MGMNCTDFED GDISGYEDDD FYAEIRRQIL ILTADDEDED EDAASGRVKK LSSSRATRKH 60 RGNDFQNCLG QDMKSHNGDL RRIFNTNASN DPQIHHFALA LDYAHQNAVF WSSLNPQCLL 120 LHTPALPKRS VLLLCKRWVV SRGRDSGNLG WQTYYSAQDD DFVSHLYYRG GLGGGRSVNA 180 PRFQTEGCAA DLTIAKQYHQ RHKVCEFHSK TSTVIAGGLT LRFFIEG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | cassava4.1_023056m | 9e-26 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02065.2 | 2e-22 | squamosa promoter binding protein-like 8 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0009s0179.1.p |