PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0009s0174.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

G2-like

Protein Properties

Length: 385aa MW: 41460 Da PI: 7.3681

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0009s0174.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104	9.1e-33	194	249	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rF++a++qLGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Kalax.0009s0174.1.p 194 KQRRCWSPELHRRFIHALQQLGGPHVATPKQIKELMKVDGLTNDEVKSHLQKYRLH 249 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.88E-18	191	252	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.314	191	251	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-28	191	252	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.1E-27	194	249	IPR006447	Myb domain, plants
Pfam	PF00249	6.1E-8	196	247	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MDYAEKMQKC SEYVEALEVE RRKIQVFQRE LPLCLELVSQ AIDACRQQLS SASPPHAAAV 60 GASHECFHVR QQSECSEQTS SHGPVLEEFI PIKLAASCSS EDVGEEEEDE SGEKSGDKSG 120 KKSDWLRSVQ LWNQSPDPAP VCEVKKNGGA FRPFNKEKAV VVAEMVDKPA SSTTVKSRKE 180 ESAKEKESGQ TQRKQRRCWS PELHRRFIHA LQQLGGPHVA TPKQIKELMK VDGLTNDEVK 240 SHLQKYRLHM RRPSATMASN ANAQGPQFVV VGGIWVPPPE YAAPAMTPAA TTSSGDPPDA 300 DNGKREARTP SNGVYAPVAT VGTPFARPAS RTQNSNQKVQ SGSHCEDDNG SHSAHGGARA 360 HSGSPASSSS THTTATATAS PASS*

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MDYAEKMQKC SEYVEALEVE RRKIQVFQRE LPLCLELVSQ AIDACRQQLS SASPPHAAAV  60
GASHECFHVR QQSECSEQTS SHGPVLEEFI PIKLAASCSS EDVGEEEEDE SGEKSGDKSG  120
KKSDWLRSVQ LWNQSPDPAP VCEVKKNGGA FRPFNKEKAV VVAEMVDKPA SSTTVKSRKE  180
ESAKEKESGQ TQRKQRRCWS PELHRRFIHA LQQLGGPHVA TPKQIKELMK VDGLTNDEVK  240
SHLQKYRLHM RRPSATMASN ANAQGPQFVV VGGIWVPPPE YAAPAMTPAA TTSSGDPPDA  300
DNGKREARTP SNGVYAPVAT VGTPFARPAS RTQNSNQKVQ SGSHCEDDNG SHSAHGGARA  360
HSGSPASSSS THTTATATAS PASS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250\|UniProtKB:Q9FX67}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00160	DAP	Transfer from AT1G25550	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003631224.1	1e-128	PREDICTED: myb family transcription factor EFM
Swissprot	Q9FPE8	1e-102	HHO3_ARATH; Transcription factor HHO3
TrEMBL	A0A438ECN5	1e-127	A0A438ECN5_VITVI; Transcription factor HHO3
STRING	XP_010695844.1	1e-124	(Beta vulgaris)
STRING	EOY02128	1e-124	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25550.1	4e-91	G2-like family protein

Link Out ? help Back to Top
Phytozome	Kalax.0009s0174.1.p

Publications ? help Back to Top
Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]