PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0009s0173.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family RAV
Protein Properties Length: 385aa    MW: 42011.5 Da    PI: 9.5449
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0009s0173.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.51.9e-1470118155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+ykGV   + +grW A+I++      ++r++lg+f  +eeAa+a++ a+++++g
  Kalax.0009s0173.1.p  70 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAARAYDTAAQRFRG 118
                          89****9888.8*********3.....5*************************98 PP
2B398.83.3e-31197300195
                          EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                          f+kv tpsdv+k++rlv+pk++ae+h             ++++ l +ed  g++W+++++y+++s++yvltkGW++Fvk++gL +gD+v 
  Kalax.0009s0173.1.p 197 FEKVVTPSDVGKLNRLVIPKQHAEKHfplnsssaaLAAAAKGVLLNFEDGGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLLAGDVVS 286
                          99*************************9988887733345999*********************************************** PP

                          EEE-SSSEE..EEE CS
                   B3  82 Fkldgrsefelvvk 95 
                          F++++  +++l++ 
  Kalax.0009s0173.1.p 287 FERSNGADGQLYID 300
                          **887677777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.9E-970118IPR001471AP2/ERF domain
CDDcd000181.16E-2670125No hitNo description
SuperFamilySSF541716.54E-1870126IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.0E-2171126IPR001471AP2/ERF domain
SMARTSM003801.2E-2971132IPR001471AP2/ERF domain
PROSITE profilePS5103220.57471126IPR001471AP2/ERF domain
PRINTSPR003674.9E-57283IPR001471AP2/ERF domain
PRINTSPR003674.9E-592108IPR001471AP2/ERF domain
SuperFamilySSF1019362.75E-30193294IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.3E-38193305IPR015300DNA-binding pseudobarrel domain
CDDcd100175.64E-29195299No hitNo description
SMARTSM010197.6E-25197305IPR003340B3 DNA binding domain
PROSITE profilePS5086314.677197305IPR003340B3 DNA binding domain
PfamPF023628.2E-29197301IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MDGSLTDESS ATSDSTSVAV DVIGFMKSTM MTEKLSRMGS GASVIIDSVM AGAVVGAKGV  60
EAESRKLPSS KYKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEEEAARAYD TAAQRFRGRD  120
AVTNFKPLAT ETVDRDAVES AFLNSRSKAE IVDMLRKHTY ADELEQSRRS IGLDNGSDGV  180
GRVCGGQHPV GAKLHLFEKV VTPSDVGKLN RLVIPKQHAE KHFPLNSSSA ALAAAAKGVL  240
LNFEDGGGKV WRFRYSYWNS SQSYVLTKGW SRFVKEKGLL AGDVVSFERS NGADGQLYID  300
LQPKSRHNES DSTARVLSDS LVPGHSTIRL FGVNIIKDPL CNIILTKNPN NNKRMRSGHE  360
DNDLFALQCM KKQRVSAPAI VAYL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-5319630513118DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022881998.11e-148AP2/ERF and B3 domain-containing transcription factor RAV1
SwissprotQ9C6M51e-131RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1
TrEMBLW8CWZ41e-146W8CWZ4_OLEEU; Tempranillo
STRINGcassava4.1_010157m1e-144(Manihot esculenta)
STRINGXP_010265251.11e-145(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-126RAV family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  3. Sgamma T,Jackson A,Muleo R,Thomas B,Massiah A
    TEMPRANILLO is a regulator of juvenility in plants.
    Sci Rep, 2014. 4: p. 3704
    [PMID:24424565]
  4. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  5. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  6. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]