PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0009s0141.3.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 313aa MW: 34362.9 Da PI: 6.1314

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0009s0141.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	46.8	5.1e-15	39	88	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E++RR++iN++f++Lr+l+P + +K + a+ L ++++Y+++Lq Kalax.0009s0141.3.p 39 RSKHSVTEQKRRSKINERFQRLRDLIPIS----EQKRDTASFLLEVIDYVQYLQ 88 899***********************8....79****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.37E-18	36	109	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.0E-20	36	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.018	37	87	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.30E-14	39	92	No hit	No description
Pfam	PF00010	2.0E-12	39	88	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-11	43	93	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MRSGVKNSNE EEEYGEEEQH GNQGNQDGKG SVSKATATRS KHSVTEQKRR SKINERFQRL 60 RDLIPISEQK RDTASFLLEV IDYVQYLQGE VQKYEGPYQP WSAEPTKLMP WRNNHWRTQS 120 IAPQPLGNGV EAGYAPKFND ATQTPLLGHP HEFNESDALS DPSGRAMDQH PDLASSAMSM 180 PMAMQTLAHH SQNDRLLSHQ LQRPLSDAQS ADPSLAAGTF SQPDGLMIEA GTISISSAYS 240 QGLLNTLTDA LQRAGVDLSQ ANISVRIDLG KRANRGPAAL EDYSNLPSTH PPPSSSGGED 300 LEQAQKRLKT QH*

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002514584.1	1e-100	transcription factor BIM2
Swissprot	Q9CAA4	1e-76	BIM2_ARATH; Transcription factor BIM2
TrEMBL	A0A2R6P3Z9	1e-102	A0A2R6P3Z9_ACTCH; Transcription factor like
STRING	XP_002514584.1	1e-99	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	2e-74	BES1-interacting Myc-like protein 2

Link Out ? help Back to Top
Phytozome	Kalax.0009s0141.3.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]