PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0009s0134.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 258aa MW: 29651.6 Da PI: 8.7069 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 98.1 | 3.7e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr+g+lKKA+E+SvLCdaeva+i+fss+gkl+eys+ Kalax.0009s0134.1.p 9 KRIENKINRQVTFSKRRTGLLKKAHEISVLCDAEVALIVFSSKGKLFEYST 59 79***********************************************96 PP | |||||||
2 | K-box | 103.3 | 3.1e-34 | 85 | 176 | 9 | 100 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + + +e+++ e++k+k+++e Lqr+qRh+lGe+LesLsl+eLq+Leq L+ +lk+iRs+Kn+l++e+i+elqkkek++qe+n+ L kk+ Kalax.0009s0134.1.p 85 QPNPSQENWSLEYTKMKSKLELLQRNQRHYLGEELESLSLRELQNLEQSLDAGLKHIRSRKNQLMHESISELQKKEKAMQEQNNLLAKKI 174 6677899**********************************************************************************9 PP K-box 99 ee 100 +e Kalax.0009s0134.1.p 175 KE 176 87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.618 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.7E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.25E-42 | 2 | 79 | No hit | No description |
SuperFamily | SSF55455 | 3.4E-34 | 2 | 87 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.1E-28 | 89 | 174 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 17.145 | 90 | 180 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009933 | Biological Process | meristem structural organization | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MGRGRVQLKR IENKINRQVT FSKRRTGLLK KAHEISVLCD AEVALIVFSS KGKLFEYSTD 60 SCMEKILERY ERYSYAERQL AGIEQPNPSQ ENWSLEYTKM KSKLELLQRN QRHYLGEELE 120 SLSLRELQNL EQSLDAGLKH IRSRKNQLMH ESISELQKKE KAMQEQNNLL AKKIKENEKT 180 MGQQAQWGHQ PHQQNHGHGH GHGASAFIIP QTLPCLNMGI PYQGEVEHVR QHHNNNNDLD 240 LTLEPIFGCN NLGCFAG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 8e-23 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 8e-23 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 8e-23 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 8e-23 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00096 | ChIP-seq | Transfer from AT1G69120 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001268210.1 | 1e-128 | apetala1 | ||||
Swissprot | Q6E6S7 | 1e-129 | AP1_VITVI; Agamous-like MADS-box protein AP1 | ||||
TrEMBL | A0A061EAI9 | 1e-122 | A0A061EAI9_THECC; K-box region and MADS-box transcription factor family protein | ||||
STRING | VIT_01s0011g00100.t01 | 1e-127 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69120.1 | 2e-90 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0009s0134.1.p |
Publications ? help Back to Top | |||
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