PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0009s0084.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ZF-HD
Protein Properties Length: 294aa    MW: 31886.7 Da    PI: 9.1664
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0009s0084.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer90.91.2e-284493357
          ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                         +  YkeC+kNhAa++Ggha+DGCgE+mp       + +l+CaACgCHRnFHR e+
  Kalax.0009s0084.2.p 44 TPSYKECQKNHAAAIGGHALDGCGEYMPP-----PSPSLQCAACGCHRNFHRPET 93
                         568*************************9.....4579**************886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.4E-244692IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-154692IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152324.9234792IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.6E-264792IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.39E-16179245IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-27180246IPR009057Homeodomain-like
TIGRFAMsTIGR015657.6E-26187243IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MDSGMVAVKM SSDQQAQAQR LCFKALSFSG KRDRSRNEHH AHETPSYKEC QKNHAAAIGG  60
HALDGCGEYM PPPSPSLQCA ACGCHRNFHR PETPSAAAGV ESRMKTVAAA PIFSHRPRRF  120
SSTSPSTSSS PSRSEAPISS IYPSAPQILM TLSSGVEMTS AHTTATTTAP DTIKLCFGED  180
GKMGKPRKRF RTKFSEEQKE KMRMFAEGFG WKMQRSDEDV VKRFCDEIGV CRSVLKVWMH  240
NNKSRNSTGI NSNNTFDYNG GGLNGDRVDS EEMHLAGING GKQSTHGGSS SSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A2e-191872431773ZF-HD homeobox family protein
1wh7_A2e-191882441874ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the up-regulation of several stress-inducible genes. Acts as a transcriptional activator by interacting with MED25 and NAC proteins. Involved in increased drought tolerance. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:17233795}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by abscisic acid and by drought and salt stress. Not induced by cold. {ECO:0000269|PubMed:17233795}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010257380.11e-56PREDICTED: zinc-finger homeodomain protein 9
SwissprotQ9SEZ15e-47ZHD11_ARATH; Zinc-finger homeodomain protein 11
TrEMBLA0A1U7ZYG63e-55A0A1U7ZYG6_NELNU; zinc-finger homeodomain protein 9
STRINGXP_010257380.15e-56(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.11e-43zinc finger homeodomain 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]