PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0009s0084.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ZF-HD | ||||||||
Protein Properties | Length: 294aa MW: 31886.7 Da PI: 9.1664 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 90.9 | 1.2e-28 | 44 | 93 | 3 | 57 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 + YkeC+kNhAa++Ggha+DGCgE+mp + +l+CaACgCHRnFHR e+ Kalax.0009s0084.1.p 44 TPSYKECQKNHAAAIGGHALDGCGEYMPP-----PSPSLQCAACGCHRNFHRPET 93 568*************************9.....4579**************886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 4.4E-24 | 46 | 92 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-15 | 46 | 92 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 24.923 | 47 | 92 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.6E-26 | 47 | 92 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.39E-16 | 179 | 245 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-27 | 180 | 246 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 7.6E-26 | 187 | 243 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MDSGMVAVKM SSDQQAQAQR LCFKALSFSG KRDRSRNEHH AHETPSYKEC QKNHAAAIGG 60 HALDGCGEYM PPPSPSLQCA ACGCHRNFHR PETPSAAAGV ESRMKTVAAA PIFSHRPRRF 120 SSTSPSTSSS PSRSEAPISS IYPSAPQILM TLSSGVEMTS AHTTATTTAP DTIKLCFGED 180 GKMGKPRKRF RTKFSEEQKE KMRMFAEGFG WKMQRSDEDV VKRFCDEIGV CRSVLKVWMH 240 NNKSRNSTGI NSNNTFDYNG GGLNGDRVDS EEMHLAGING GKQSTHGGSS SSV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 2e-19 | 187 | 243 | 17 | 73 | ZF-HD homeobox family protein |
1wh7_A | 2e-19 | 188 | 244 | 18 | 74 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the up-regulation of several stress-inducible genes. Acts as a transcriptional activator by interacting with MED25 and NAC proteins. Involved in increased drought tolerance. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:17233795}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by abscisic acid and by drought and salt stress. Not induced by cold. {ECO:0000269|PubMed:17233795}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010257380.1 | 1e-56 | PREDICTED: zinc-finger homeodomain protein 9 | ||||
Swissprot | Q9SEZ1 | 5e-47 | ZHD11_ARATH; Zinc-finger homeodomain protein 11 | ||||
TrEMBL | A0A1U7ZYG6 | 3e-55 | A0A1U7ZYG6_NELNU; zinc-finger homeodomain protein 9 | ||||
STRING | XP_010257380.1 | 5e-56 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69600.1 | 1e-43 | zinc finger homeodomain 1 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0009s0084.1.p |
Publications ? help Back to Top | |||
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