PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0008s0232.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 314aa    MW: 35426.4 Da    PI: 5.1514
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0008s0232.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.2e-19109159155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          ++y+GVr+++ +g+W+AeIrdp     r  r +lg++ taeeAa  +++a+ +l+g
  Kalax.0008s0232.2.p 109 KKYRGVRQRP-WGKWAAEIRDPQ----RrVRLWLGTYNTAEEAAMVYDNAAIQLRG 159
                          59********.**********93....35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.87E-32109166No hitNo description
SMARTSM003801.3E-37110173IPR001471AP2/ERF domain
PROSITE profilePS5103224.026110167IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-30110167IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-22110167IPR016177DNA-binding domain
PfamPF008473.2E-13110159IPR001471AP2/ERF domain
PRINTSPR003672.1E-10111122IPR001471AP2/ERF domain
PRINTSPR003672.1E-10133149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MFNQVKYTEH KEASTVVLHD RLASPDLPKL LRISLTDSYA TDSSSDEDDQ LQRSLAPRRL  60
RVKKYVHEVS IKAPSVAPVE NTNETPKPSK CRKLTGKPVY HQPSRQIEKK YRGVRQRPWG  120
KWAAEIRDPQ RRVRLWLGTY NTAEEAAMVY DNAAIQLRGP DALTNFSAHP TPLQEVESSK  180
KFDSIAATSS KDSLSPRVCS PTSVLRFQSE EAESQLSSYA ETQEEDKGKR GISSDFTECD  240
SFLYPNDAFH LDFFPEPRVT NDTSFLSQDF GEEDYLFPEP GFGYGPASSK WVLDEFFQQD  300
IGDLFGSDPL LAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-20109166159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A6e-20109166462ATERF1
3gcc_A6e-20109166462ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGGorai.008G252300.17e-66(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.24e-62cytokinin response factor 2