PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0008s0232.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ERF | ||||||||
Protein Properties | Length: 314aa MW: 35426.4 Da PI: 5.1514 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.1 | 1.2e-19 | 109 | 159 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr+++ +g+W+AeIrdp r r +lg++ taeeAa +++a+ +l+g Kalax.0008s0232.1.p 109 KKYRGVRQRP-WGKWAAEIRDPQ----RrVRLWLGTYNTAEEAAMVYDNAAIQLRG 159 59********.**********93....35*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.87E-32 | 109 | 166 | No hit | No description |
SMART | SM00380 | 1.3E-37 | 110 | 173 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.026 | 110 | 167 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-30 | 110 | 167 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-22 | 110 | 167 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.2E-13 | 110 | 159 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-10 | 111 | 122 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-10 | 133 | 149 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MFNQVKYTEH KEASTVVLHD RLASPDLPKL LRISLTDSYA TDSSSDEDDQ LQRSLAPRRL 60 RVKKYVHEVS IKAPSVAPVE NTNETPKPSK CRKLTGKPVY HQPSRQIEKK YRGVRQRPWG 120 KWAAEIRDPQ RRVRLWLGTY NTAEEAAMVY DNAAIQLRGP DALTNFSAHP TPLQEVESSK 180 KFDSIAATSS KDSLSPRVCS PTSVLRFQSE EAESQLSSYA ETQEEDKGKR GISSDFTECD 240 SFLYPNDAFH LDFFPEPRVT NDTSFLSQDF GEEDYLFPEP GFGYGPASSK WVLDEFFQQD 300 IGDLFGSDPL LAL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 6e-20 | 109 | 166 | 1 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 6e-20 | 109 | 166 | 4 | 62 | ATERF1 |
3gcc_A | 6e-20 | 109 | 166 | 4 | 62 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Gorai.008G252300.1 | 7e-66 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23750.2 | 4e-62 | cytokinin response factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0008s0232.1.p |