PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0008s0215.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 683aa    MW: 76644.6 Da    PI: 6.4652
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0008s0215.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3841.7e-1173096801374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          l++lL++cA+av+++d + a++lL++++++asp gd +qRla++f+ +L+arla+++s++yk l++++ts    ++ l+a++l+  ++P+
  Kalax.0008s0215.1.p 309 LRTLLVHCAQAVAADDSRSANELLKQIRQHASPFGDGNQRLAHCFADGLEARLAGTGSQIYKGLTSKKTS---AADILKAYHLYLAACPF 395
                          6789*************************************************************99999...9**************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                           k+s++  N++Il+ ++++ rvHiiDf+i +G+QWp++lq ++ R++gpp++RiTgv+ p++g   +e++eetg+r+a +Ae++g+pfef
  Kalax.0008s0215.1.p 396 RKISNFFSNKTILNVAANSMRVHIIDFGILYGFQWPTFLQRISLRAGGPPKVRITGVDFPQPGfrPAERVEETGRRIAGYAERFGIPFEF 485
                          **************************************************************9*************************** PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                          n+ +ak++e++++e+L+++++E l+Vn+ ++ ++l+de+v+ +s+r+ vL+lv+++ P+v+++   +  +n++ F++rf eal ++salf
  Kalax.0008s0215.1.p 486 NA-IAKKWETIKIEDLKIDQDELLIVNSLYRFQNLHDETVAANSARSIVLNLVRKITPEVFILGIVNGAYNAPFFVTRFREALFHFSALF 574
                          **.7************************************************************************************** PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                          d+le+++pre  er+ +Ere++gre+ nv+aceg er+er et+++W+ r  +aGF+++p++ ++ k a+  ++  + + + ++e+ +++
  Kalax.0008s0215.1.p 575 DMLETNVPREYLERMLIEREIFGREALNVIACEGWERIERPETYKQWQVRQLRAGFRQLPVDRDIIKRAEDRVKSSYHKDFVLDEDGQWF 664
                          *****************************************************************************888********** PP

                 GRAS 359 vlgWkdrpLvsvSaWr 374
                          ++gWk+r+++++S+W+
  Kalax.0008s0215.1.p 665 LQGWKGRTIYALSSWK 680
                          ***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.992283660IPR005202Transcription factor GRAS
PfamPF035146.0E-115309680IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MDPRLRGGSM ASTYGYNHQS ASSGLDQCLI GGDRDFHHFE NDQTPSTSSV ASVPEEESPE  60
EDFSDVVLKY INQMLMEEDM EDKTCMLQDS LDLQAAEKPF YEALGEKYPP SPIVPVYTTT  120
SQSSLTCSNG VFAMLNGMVD SPISTLQISD FCKESASVWQ FKKGVEEANK FLPASANLLV  180
NLEGRASTYL ESESETNGAL VKEETKNDGE YVSYGSRGRK HLHREADESE ERSSKQAAVY  240
VESNVKSEIF DEVLLCSKGS TTSPLATLRE SLQNGTSKAS QLNGLVKAAV STRKGRGRKQ  300
NGKKEVVDLR TLLVHCAQAV AADDSRSANE LLKQIRQHAS PFGDGNQRLA HCFADGLEAR  360
LAGTGSQIYK GLTSKKTSAA DILKAYHLYL AACPFRKISN FFSNKTILNV AANSMRVHII  420
DFGILYGFQW PTFLQRISLR AGGPPKVRIT GVDFPQPGFR PAERVEETGR RIAGYAERFG  480
IPFEFNAIAK KWETIKIEDL KIDQDELLIV NSLYRFQNLH DETVAANSAR SIVLNLVRKI  540
TPEVFILGIV NGAYNAPFFV TRFREALFHF SALFDMLETN VPREYLERML IEREIFGREA  600
LNVIACEGWE RIERPETYKQ WQVRQLRAGF RQLPVDRDII KRAEDRVKSS YHKDFVLDED  660
GQWFLQGWKG RTIYALSSWK PV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-502936813380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021825531.10.0scarecrow-like protein 9
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A314YYY20.0A0A314YYY2_PRUYE; Scarecrow-like protein 9
TrEMBLF6HLC10.0F6HLC1_VITVI; Uncharacterized protein
STRINGVIT_08s0007g00510.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein