PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0008s0094.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 368aa    MW: 42093.1 Da    PI: 5.2214
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0008s0094.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding582.2e-184996148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT eEd +l  +++ +G g+W++ ar+ g++Rt+k+c++rw++yl
  Kalax.0008s0094.1.p 49 RGPWTDEEDRILSSYIANHGEGRWNSLARCAGLNRTGKSCRLRWLNYL 96
                         89********************************************97 PP
2Myb_DNA-binding49.11.3e-15102145146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+ + eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Kalax.0008s0094.1.p 102 RGNISLEEQLLILELHSRWGNR-WSKIAKYLP-GRTDNEIKNYWRT 145
                          78899*****************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.59144100IPR017930Myb domain
SuperFamilySSF466891.91E-3047143IPR009057Homeodomain-like
SMARTSM007172.2E-154898IPR001005SANT/Myb domain
PfamPF002492.4E-164996IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-2350103IPR009057Homeodomain-like
CDDcd001672.79E-125196No hitNo description
SMARTSM007173.3E-14101149IPR001005SANT/Myb domain
PROSITE profilePS5129418.232101151IPR017930Myb domain
PfamPF002491.8E-14102145IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-22104150IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MNNNHGILMM NGGGGVFSGH NVNSLPSSNK QRQEEPEDDM TTMMEDLRRG PWTDEEDRIL  60
SSYIANHGEG RWNSLARCAG LNRTGKSCRL RWLNYLRPDV RRGNISLEEQ LLILELHSRW  120
GNRWSKIAKY LPGRTDNEIK NYWRTRVQKH AKQLKCDVNS QQFKDTLRYL WMPRLLERIP  180
AACYSDNHQL TAPPTTASTL QTDHESHAAV GGFANSTDPS MGTNRDRIRP IPEGYEPCYG  240
PFSDDQVSPV SDLIDDNCDD TDYVPAHNYY DYQNNYISNG AGNSSDTNNS LVNNPMGMGH  300
DCYNVYEYDS AGVTMMGEDQ MHPNNNNNGD EWMMQNGDDF WNADHLWLNN SKQQYQQQHV  360
IYSNNFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24441492106B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011027944.13e-91PREDICTED: transcription factor MYB108-like
TrEMBLA0A1S4DCZ61e-87A0A1S4DCZ6_TOBAC; transcription factor MYB108-like
TrEMBLA0A1U7XQE91e-87A0A1U7XQE9_NICSY; transcription factor MYB108-like
STRINGXP_010024826.13e-89(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.12e-78myb domain protein 78