PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0007s0033.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family AP2
Protein Properties Length: 564aa    MW: 62554.7 Da    PI: 7.1966
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0007s0033.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.61.7e-14275334155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+a++ a++k++g
  Kalax.0007s0033.1.p 275 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDNEDKAARAYDLAALKYWG 334
                          57*******************666664478446**********99*************98 PP
2AP249.79.2e-16377428155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Kalax.0007s0033.1.p 377 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 428
                          57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.33E-22275344No hitNo description
PfamPF008472.5E-11275334IPR001471AP2/ERF domain
SuperFamilySSF541715.23E-17275343IPR016177DNA-binding domain
SMARTSM003802.3E-27276348IPR001471AP2/ERF domain
PROSITE profilePS5103219.493276342IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-15276343IPR001471AP2/ERF domain
PRINTSPR003675.0E-6277288IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-17377437IPR016177DNA-binding domain
CDDcd000182.67E-11377436No hitNo description
PfamPF008473.9E-10377428IPR001471AP2/ERF domain
SMARTSM003807.9E-31378442IPR001471AP2/ERF domain
PROSITE profilePS5103219.111378436IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-18378436IPR001471AP2/ERF domain
PRINTSPR003675.0E-6418438IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MAPVPDQSNW LTFSLYPNMN MMRSSDDPDH QTHRQPHHHQ QQNNHNNSNF ISYEAAASPN  60
ASSPQYFIDN FYANGYSYSK PQMDFQHHRA QQQVPDSLRW LSSSAAAPKL ENFLDSSSMV  120
RYAESQTDTQ DSGLTMYEHG SAAAAYYNQA AAAQLIQTNS GSEVDDSGSL SRAAAVAGAH  180
HHHHQQQNQH QLVEYESSAN GAQQHQQSLI AFSHQQQPVQ NGGLSLGVNI NNNLNTTQNL  240
NNNCGAQMVQ QEEKGTVAVV DTSKKISDTF GQRTSIYRGV TRHRWTGRYE AHLWDNSCRR  300
EGQARKGRQV YLGGYDNEDK AARAYDLAAL KYWGPNATTN FPVANYAKEL EEMKPMTKQE  360
FIASLRRKSS GFSRGASIYR GVTRHHQQGR WQARIGRVAG NKDLYLGTFA TEEEAAEAYD  420
IAAIKFRGIN AVTNFEMNRY DVEAITNSTL PVGGAAKRLK STLESEQKAL VSIALNEAQP  480
RPPSHTSSSN ISFSLTQPMS AIPCGIPFDA MPSLYQQSLY HQLQNSHPAL AIPEPQTSAA  540
SSGPAITFLP TTGEYYVWPH QSY*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017969779.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU21e-145AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A1R3HRM30.0A0A1R3HRM3_9ROSI; Uncharacterized protein
STRINGEOX919250.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.11e-130AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]