PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0006s0265.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 211aa    MW: 23814 Da    PI: 10.1727
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0006s0265.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding574.5e-181764148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT+eEd +l+++++  G+++Wk++a + g+ R++k+c++rw +yl
  Kalax.0006s0265.1.p 17 RGAWTPEEDRRLAQVIETQGPRRWKSVAVKAGLSRCGKSCRLRWMNYL 64
                         89********************************************97 PP
2Myb_DNA-binding51.13.1e-1670115148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg+ +++E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
  Kalax.0006s0265.1.p  70 RGNISAQEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 115
                          7899******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.1461264IPR017930Myb domain
SMARTSM007173.8E-141666IPR001005SANT/Myb domain
SuperFamilySSF466891.17E-2816111IPR009057Homeodomain-like
PfamPF002496.3E-171764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.9E-241871IPR009057Homeodomain-like
CDDcd001675.30E-101964No hitNo description
PROSITE profilePS5129425.25265119IPR017930Myb domain
SMARTSM007171.5E-1569117IPR001005SANT/Myb domain
PfamPF002491.2E-1470115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-2572118IPR009057Homeodomain-like
CDDcd001671.18E-1074115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MRSLKPGAAA TSMAGNRGAW TPEEDRRLAQ VIETQGPRRW KSVAVKAGLS RCGKSCRLRW  60
MNYLRPNIKR GNISAQEEDL ILRLHKLLGN RWSLIAGRLP GRTDNEIKNY WNSHLSKKAK  120
QFQTNNKLAT SINGAGNVEE TRQSASKSIV IVKHNESMMC NNETASCSNN AKLRMEEQKQ  180
SEEDGGLSME WVSQLLVDID DQSWFLNYYT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-29171194105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026437377.13e-72transcription factor WER-like
SwissprotQ388503e-51MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A059D4B16e-69A0A059D4B1_EUCGR; Uncharacterized protein
STRINGXP_009362719.13e-70(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.11e-53myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]