PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0006s0237.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C3H

Protein Properties

Length: 352aa MW: 38115.1 Da PI: 8.0373

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0006s0237.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.1	2.5e-12	162	186	1	25
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 y t Cr +a+tG C+yG++C+F+H Kalax.0006s0237.1.p 162 YTTDVCRSWAETGSCQYGSNCQFSH 186 7799********************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	3.53E-8	161	191	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.6E-6	161	188	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.047	161	189	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.7E-11	162	190	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.2E-9	162	186	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MENFYNNNIP MYPNRADMNS KMAGSPYTAW SGGYYNLHRM MTPPPLDPYA LDNRENIDPQ 60 LLMSWSCSSS SSGDNFSTPS FVNRPRYWSG YGNRSPLSLV ESFGKSTSSS ATRSPPVFAN 120 GSLAMEEGVL VMDGVLVGNG HGGRQRSGKD SSGSSSSSVK SYTTDVCRSW AETGSCQYGS 180 NCQFSHRKED ANRARFSNKG KPELEVTFPR SPFSDSSLSI FRGQNSYSSP TMSSRGVVYG 240 RSPLGTGSAD GSRSSDSQTS RTELSPVIHS DWVPQDEGID VRPPGVENPT REEVLAYMNS 300 IMYGPRVRKR LPVFTSICPD SPPGSPCPTP PAPSHLPPIC PASNPRDSSF S*

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MENFYNNNIP MYPNRADMNS KMAGSPYTAW SGGYYNLHRM MTPPPLDPYA LDNRENIDPQ  60
LLMSWSCSSS SSGDNFSTPS FVNRPRYWSG YGNRSPLSLV ESFGKSTSSS ATRSPPVFAN  120
GSLAMEEGVL VMDGVLVGNG HGGRQRSGKD SSGSSSSSVK SYTTDVCRSW AETGSCQYGS  180
NCQFSHRKED ANRARFSNKG KPELEVTFPR SPFSDSSLSI FRGQNSYSSP TMSSRGVVYG  240
RSPLGTGSAD GSRSSDSQTS RTELSPVIHS DWVPQDEGID VRPPGVENPT REEVLAYMNS  300
IMYGPRVRKR LPVFTSICPD SPPGSPCPTP PAPSHLPPIC PASNPRDSSF S*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Link Out ? help Back to Top
Phytozome	Kalax.0006s0237.1.p