PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0006s0185.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MIKC_MADS
Protein Properties Length: 246aa    MW: 27878.8 Da    PI: 8.1226
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0006s0185.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF100.18.3e-32959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifss+gklye++s
  Kalax.0006s0185.1.p  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCS 59
                         79***********************************************96 PP
2K-box92.38.3e-318917316100
                K-box  16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                          + +qe+ kLk ++e Lq+ qR+llGedL +L+ keL+qLe+qLe slk+iRs+K++++l q+ +lq ke++l e+nkaL++klee
  Kalax.0006s0185.1.p  89 NNYQEYLKLKGRVEALQKIQRNLLGEDLAPLNTKELEQLEHQLEISLKQIRSTKTQFMLHQLADLQLKEQNLLETNKALKQKLEE 173
                          679*******************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.0E-42160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.263161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-33276IPR002100Transcription factor, MADS-box
CDDcd002651.39E-46279No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-33323IPR002100Transcription factor, MADS-box
PfamPF003191.7E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-333859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129715.50887177IPR002487Transcription factor, K-box
PfamPF014861.2E-2589171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFCSS  60
PSMIKTLERY QQCSFSALDA CRPPCDSPNN YQEYLKLKGR VEALQKIQRN LLGEDLAPLN  120
TKELEQLEHQ LEISLKQIRS TKTQFMLHQL ADLQLKEQNL LETNKALKQK LEEGQERIPF  180
AQPWDDGSGH TIPYIHLATH SEASFYQPTG ITNNSTVQLG YSHAGGGDEG SQPQSMNCFM  240
PGWFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A6e-299217422104Developmental protein SEPALLATA 3
4ox0_B6e-299217422104Developmental protein SEPALLATA 3
4ox0_C6e-299217422104Developmental protein SEPALLATA 3
4ox0_D6e-299217422104Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankU789473e-67U78947.1 Malus domestica MADS-box protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021592871.11e-116developmental protein SEPALLATA 1-like
SwissprotQ8LLR21e-104MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLA0A2C9UL861e-115A0A2C9UL86_MANES; Uncharacterized protein
STRINGcassava4.1_033888m1e-116(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.13e-96MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]