PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0006s0112.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | TALE | ||||||||
Protein Properties | Length: 378aa MW: 42325.8 Da PI: 6.4625 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 22.5 | 1.9e-07 | 326 | 359 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + Kalax.0006s0112.2.p 326 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 359 569*****************************87 PP | |||||||
2 | ELK | 29.3 | 1.9e-10 | 280 | 301 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+ +++++++E++ Kalax.0006s0112.2.p 280 ELKHELKNGYKDKIVDIREEIL 301 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 2.6E-19 | 116 | 160 | IPR005540 | KNOX1 |
Pfam | PF03790 | 5.7E-17 | 118 | 159 | IPR005540 | KNOX1 |
SMART | SM01256 | 3.5E-26 | 168 | 223 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.4E-18 | 174 | 222 | IPR005541 | KNOX2 |
Pfam | PF03789 | 3.0E-5 | 280 | 301 | IPR005539 | ELK domain |
SMART | SM01188 | 6.6E-4 | 280 | 301 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 9.69 | 280 | 300 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.499 | 300 | 363 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 9.84E-16 | 302 | 368 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 5.9E-10 | 302 | 367 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.65E-11 | 303 | 362 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-24 | 307 | 365 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 7.8E-18 | 320 | 359 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
MAYQNHPAHQ MELQHLADQQ LTEGSGGGGG SGGGAMTWLN SGVVQQHDNR YTEGNFLHLQ 60 TNSGSSNSPT AANRYMPHSD ESDNHKRGGG SRVNDRYGKD EDAGNNEYGA VNWENARCKA 120 EVLSHPLYEQ LLSAHVSCLR IATPVDQLPR IDAQLAQSQS VVAKYLAVGP GNLDDKELDQ 180 FMTNYVLLLC SFKEQLQQHV RVHAMEAVMA CWDLEQSLQT LTGVSPGEGN GETMSDDEDN 240 HMDSDTHLFD GSLDSPDSMG FGPLILTDSE RSLMERVRQE LKHELKNGYK DKIVDIREEI 300 LRKRRAGKLP GDTTSHLKAW WKSHSKWPYP TEEDKARLVQ ETGLQLKQIN NWFINQRKRN 360 WHSNSSSSNS SKSKRKR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 356 | 376 | RKRNWHSNSSSSNSSKSKRKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU272789 | 0.0 | EU272789.1 Kalanchoe x houghtonii class 1 knox protein (KN3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002265494.1 | 1e-178 | PREDICTED: homeobox protein knotted-1-like 13 isoform X3 | ||||
Swissprot | P48000 | 1e-162 | KNAT3_ARATH; Homeobox protein knotted-1-like 3 | ||||
TrEMBL | B1P381 | 0.0 | B1P381_9MAGN; Class 1 knox protein | ||||
STRING | GSMUA_Achr7P05170_001 | 1e-180 | (Musa acuminata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25220.2 | 1e-153 | KNOTTED1-like homeobox gene 3 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0006s0112.2.p |
Publications ? help Back to Top | |||
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