PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0006s0112.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TALE
Protein Properties Length: 385aa    MW: 42917.3 Da    PI: 6.2656
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0006s0112.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.52e-073263592154
                          HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          k +yp++e++++L +++gL+ +q+ +WF N+R +
  Kalax.0006s0112.1.p 326 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 359
                          569*****************************87 PP
2ELK29.31.9e-10280301122
                  ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                          ELKh+L+++Y+ +++++++E++
  Kalax.0006s0112.1.p 280 ELKHELKNGYKDKIVDIREEIL 301
                          9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.6E-19116160IPR005540KNOX1
PfamPF037905.9E-17118159IPR005540KNOX1
SMARTSM012563.5E-26168223IPR005541KNOX2
PfamPF037911.4E-18174222IPR005541KNOX2
SMARTSM011886.6E-4280301IPR005539ELK domain
PROSITE profilePS512139.69280300IPR005539ELK domain
PfamPF037893.1E-5280301IPR005539ELK domain
PROSITE profilePS5007111.499300363IPR001356Homeobox domain
SMARTSM003895.9E-10302367IPR001356Homeobox domain
SuperFamilySSF466891.28E-15302368IPR009057Homeodomain-like
CDDcd000863.19E-11303362No hitNo description
Gene3DG3DSA:1.10.10.601.9E-24307365IPR009057Homeodomain-like
PfamPF059208.0E-18320359IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MAYQNHPAHQ MELQHLADQQ LTEGSGGGGG SGGGAMTWLN SGVVQQHDNR YTEGNFLHLQ  60
TNSGSSNSPT AANRYMPHSD ESDNHKRGGG SRVNDRYGKD EDAGNNEYGA VNWENARCKA  120
EVLSHPLYEQ LLSAHVSCLR IATPVDQLPR IDAQLAQSQS VVAKYLAVGP GNLDDKELDQ  180
FMTNYVLLLC SFKEQLQQHV RVHAMEAVMA CWDLEQSLQT LTGVSPGEGN GETMSDDEDN  240
HMDSDTHLFD GSLDSPDSMG FGPLILTDSE RSLMERVRQE LKHELKNGYK DKIVDIREEI  300
LRKRRAGKLP GDTTSHLKAW WKSHSKWPYP TEEDKARLVQ ETGLQLKQIN NWFINQRKRN  360
WHSNSSSSNS SKSKRKSNAG ETTS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2727890.0EU272789.1 Kalanchoe x houghtonii class 1 knox protein (KN3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010656543.10.0PREDICTED: homeobox protein knotted-1-like 13 isoform X2
SwissprotP480001e-165KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLB1P3810.0B1P381_9MAGN; Class 1 knox protein
STRINGGSMUA_Achr7P05170_0011e-180(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-159KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]