PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0006s0081.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 255aa MW: 27773.7 Da PI: 6.634 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.4 | 3.8e-19 | 16 | 61 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W +eEd+ll ++v+++G+++W+tIa+ ++ gRt+k+c++rw++ Kalax.0006s0081.1.p 16 RGHWRPEEDQLLRNLVERFGPKNWNTIAEQIQ-GRTGKSCRLRWFNQ 61 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 51.7 | 2e-16 | 68 | 111 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++++T+eE+ +l+ a + +G++ W++Iar+++ gRt++ +k++++ Kalax.0006s0081.1.p 68 KLSFTEEEETRLILAQRAHGNK-WSAIARHFP-GRTDNAVKNHFHV 111 689*******************.*********.**********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.633 | 11 | 66 | IPR017930 | Myb domain |
SMART | SM00717 | 2.4E-15 | 15 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-18 | 16 | 61 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.48E-29 | 16 | 109 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.8E-26 | 17 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.33E-15 | 19 | 60 | No hit | No description |
PROSITE profile | PS51294 | 17.054 | 67 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 4.7E-13 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-13 | 69 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.45E-11 | 70 | 110 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.0E-19 | 70 | 116 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MEGHEGDNDN QGATSRGHWR PEEDQLLRNL VERFGPKNWN TIAEQIQGRT GKSCRLRWFN 60 QLDPNLNKLS FTEEEETRLI LAQRAHGNKW SAIARHFPGR TDNAVKNHFH VIMGRKRKDP 120 NISLPSFTPT LVGGYNIGAP VGPSGMIYEP TFPKYAGSNS FIPGTQNPYP FNFGDIDGSN 180 LIGNAPVALD GNAAYSNFNA GAAGGPFGYS GFRSVPGMVG DSSQATNINV AQNEDANPPF 240 IDFLGVESKN QADH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-30 | 16 | 116 | 4 | 104 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 6e-30 | 16 | 116 | 58 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 6e-30 | 16 | 116 | 58 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 1e-30 | 16 | 116 | 4 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 1e-30 | 16 | 116 | 4 | 104 | C-Myb DNA-Binding Domain |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 6e-55 | myb domain protein 105 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0006s0081.1.p |