PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0006s0045.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 354aa    MW: 37546.9 Da    PI: 7.9061
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0006s0045.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.73e-1854103255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+WvAeIr+p++   r+r +lg+f tae+Aa+a+++a++ l+g
  Kalax.0006s0045.1.p  54 RYRGVRQRS-WGKWVAEIREPRK---RTRKWLGTFSTAEDAARAYDRAALVLYG 103
                          59****999.**********954...5**********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.0E-1254103IPR001471AP2/ERF domain
PROSITE profilePS5103222.72154111IPR001471AP2/ERF domain
CDDcd000181.67E-2054111No hitNo description
SuperFamilySSF541715.56E-2154112IPR016177DNA-binding domain
SMARTSM003801.4E-3854117IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.6E-3054111IPR001471AP2/ERF domain
PRINTSPR003671.9E-105566IPR001471AP2/ERF domain
PRINTSPR003671.9E-107793IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MNPNLPLSNP NTEENNNSNG SSCSNSNNNT DINDSCKSNK CGKGKGGPDN NKFRYRGVRQ  60
RSWGKWVAEI REPRKRTRKW LGTFSTAEDA ARAYDRAALV LYGSRAQLNL QPSSPNAAAA  120
ASSRASSSSR ATSSSSSSST QTQLRPLLPR PPTGFNYAAF PIQPAPAAQP GSSHHQNPAA  180
FSVLSAAPSA YVPYGLYGPS LVFPNAAATN HSNSKLGHQQ QHQVTTYQSL HPFPDPNSNH  240
TCTEPVAGKD RMATVTATPT TSYSNPNSKE EVRLGNNGDG TMSYEEINSL VGSLCSNSDQ  300
GVGVGPVGQS VSDPLAVVGS GPDQDLWPSF GGEDGIPATS FWDYGQDPFL FDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-1855110359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40220.12e-25ERF family protein