PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0005s0268.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRF
Protein Properties Length: 581aa    MW: 61882.1 Da    PI: 8.0427
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0005s0268.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC72.64.3e-23217261145
                  WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                          d+epgrCrRtDGKkWRC ++++ g+k+CE+Hl+rgr+rsrk++e 
  Kalax.0005s0268.1.p 217 DPEPGRCRRTDGKKWRCAKDAVHGHKYCEKHLNRGRHRSRKPVEG 261
                          79****************************************985 PP
2QLQ51.23.7e-18146181237
                  QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                           FT +Q+ +L++Q+l+yKy+aan+ vP++L+ +i+k
  Kalax.0005s0268.1.p 146 LFTQNQWFELEQQALIYKYIAANVSVPSNLIIPIKK 181
                          6*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.6E-10145181IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.477146181IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088806.9E-13147179IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.911217261IPR014977WRC domain
PfamPF088792.4E-19218260IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MLYGGAVEAA AAAGVMDFGT KPKSDRPESA KRERSEDGQV GGGGGGQRRA KAACKGGVDA  60
MLLMSSSAVG VVEGQLGSGS LVFEDERNML SFSSPGGAED EKMGQNAALQ FCYPQSICSR  120
TSGDFGLAGS LTSPNMHAPF AGARQLFTQN QWFELEQQAL IYKYIAANVS VPSNLIIPIK  180
KSFNPWGLPG SISPNGSLSS SSFGWGPFHL GFHGSTDPEP GRCRRTDGKK WRCAKDAVHG  240
HKYCEKHLNR GRHRSRKPVE GQKPDQSVAG AANFANKVAP MASSLSKASV MPGGRSANGL  300
AAKGAHSTLN PSTDLITKRT QDLQGISMLS HAISLGSKDA SFAIPKPKDP FEESYQSEFG  360
FVSSDYLQNP YQKISSCLNS SFVDFSDQDS RDQHPLRQFM EDWPKERSEH SSLTWQDETK  420
PDWTKLSMAI PVVSSGLSSS ASSPTHERLA LSPLRLGLEF HQNEMGTNEF GEPFHKDPAY  480
MPWGSSAGGP LGEVLKISSS KRPHIENPSG LNLMTKGWDG AKAQFEPSPT GVLLKSAFGS  540
LSNSSAGSSP RGESRMTSEA GSLCNDAPGS TTLVSSLPFS *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015890408.11e-148growth-regulating factor 1 isoform X1
TrEMBLA0A438FBN51e-141A0A438FBN5_VITVI; Growth-regulating factor 1
STRINGVIT_00s0494g00010.t011e-142(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.14e-71growth-regulating factor 1