PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0005s0216.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 545aa    MW: 60075.7 Da    PI: 4.9852
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0005s0216.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.6e-173683148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT  Ed +l+d+vk++G g+W+++ ++ g+ R++k+c++rw ++l
  Kalax.0005s0216.1.p 36 KGPWTSAEDAILIDYVKKHGEGNWNAVQKHSGLFRCGKSCRLRWANHL 83
                         79******************************************9986 PP
2Myb_DNA-binding52.41.2e-1689132146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +g++T+eE+ l++++++++G++ W++ a++++ gRt++++k++w++
  Kalax.0005s0216.1.p  89 KGAFTEEEERLIIELHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 132
                          799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.0543183IPR017930Myb domain
SuperFamilySSF466892.23E-3035130IPR009057Homeodomain-like
SMARTSM007172.4E-153585IPR001005SANT/Myb domain
PfamPF002492.3E-153683IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-243791IPR009057Homeodomain-like
CDDcd001676.16E-123883No hitNo description
PROSITE profilePS5129426.93184138IPR017930Myb domain
SMARTSM007172.2E-1788136IPR001005SANT/Myb domain
PfamPF002498.1E-1689132IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2592137IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MSIDTEDGPL SNEELESQLI GDESSRGITS GIVLKKGPWT SAEDAILIDY VKKHGEGNWN  60
AVQKHSGLFR CGKSCRLRWA NHLRPNLKKG AFTEEEERLI IELHAKMGNK WARMAAHLPG  120
RTDNEIKNYW NTRIKRRQRA GLPLYPPEAC LQALLESQSQ DPSRVNSRGT GYNEPNMYNI  180
SDVMFHSMPA ARGSLPYFPE PPGMSSDNVL LEALALTRRT NFTSSQPPKR SCGLRSHVCG  240
SDVIVKKELR SFEPVQDDPK VNESLELFFP DDRDNHLSLG ETQDSHSFVN GNFSTPKPAC  300
EAVKSELPSF QYPDTYSSNW DASYSASPLL DPIDSNIHGE TPNGTVHSEC SSPRNSGLLD  360
ALLYEARAIS GVKNQLSKKS SHSSAVTLSE SAGESGPKFC ETEIGNYSEP MSPFGSTTSI  420
YGGSELTAAN GTLLDSHPFK ETYFGCKLKS EPADNVSNPV EENSPNRFDF SEPGLPFYSD  480
WLEQESGFIM EEASLEEGAG EAFVGNDSIN DFRYMGSALT GQGWGNCSYV WKSMPTVRQV  540
CKFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-33341375107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024458415.11e-170transcription factor MYB33 isoform X3
TrEMBLA0A1R3FUA91e-170A0A1R3FUA9_COCAP; Uncharacterized protein
STRINGPOPTR_0001s07330.11e-167(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11440.11e-104myb domain protein 65