PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0005s0127.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TALE
Protein Properties Length: 805aa    MW: 87846 Da    PI: 7.1937
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0005s0127.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.41.4e-096026391954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yp+ +++  LA+++gLt +qV++WF N R +
  Kalax.0005s0127.1.p 602 FEHflHPYPTDTDKHMLATQTGLTRSQVSNWFINARVR 639
                          554459******************************88 PP
2BELL96.32.7e-31458528272
                 BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          r + q kkakLl++leeV +rYk y++q+q+v+s+Fe vagl +a+pY+s Al+ +SrhF  Lk+ai++q+
  Kalax.0005s0127.1.p 458 RPNYQLKKAKLLHMLEEVSRRYKLYYQQMQMVVSAFESVAGLTAAAPYISSALNSVSRHFTHLKNAISDQL 528
                          56789***************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.5E-39364526IPR006563POX domain
PfamPF075263.8E-37369525IPR006563POX domain
PROSITE profilePS5007111.969580643IPR001356Homeobox domain
SMARTSM003891.6E-9583647IPR001356Homeobox domain
CDDcd000869.40E-13583644No hitNo description
SuperFamilySSF466896.84E-17585649IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-28586647IPR009057Homeodomain-like
PfamPF059204.4E-18600639IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 805 aa     Download sequence    Send to blast
MDSTMNNFIS DQLHVAQQSR REKLRVQHCS PLRSGHRVDD YTSGMEVVNH VFDPAPIQVG  60
DDDVRNAGVL VCHHPTRVSS ELLLDFSGNI CHNVRLSGAE EQASSFAGNS SGNPVSSNAD  120
VSLKPRRENY QEHCGVWKSV GPNSNSGNWN TDYLGRYRKN SSVGLASDLS ALGMRAKHST  180
TTGHRQNQMN FDPQLSYQIA LSDEVTTAVV GLQPNNGVRG STAFVSWGSY GGDHEHVRAV  240
PHVYHQLDGD HRLLGGSTWN GEMSFPHSRI DPMVVDSHSQ GLSLSLCSNP AASMISGSQF  300
GDAHIIPQSI PLPTVANISC EDSKPLSPTN LVRPASVGQG SSLEEPVGAS ANYHRQTGPL  360
GPFTGYAAIL KSSRFLKPAQ QLLDEYCGVL GKLASSSTGV ASDRNANQAG DLATAVNSIE  420
SEVGTSGDIL GVSTSRHLDS NEIIKGATSS PGPGEAQRPN YQLKKAKLLH MLEEVSRRYK  480
LYYQQMQMVV SAFESVAGLT AAAPYISSAL NSVSRHFTHL KNAISDQLRH IKTFLGEDFA  540
LPGIIRSKED LNAKRFKYTD HGFQRLKSGG SNIGLLEPQQ HIWRPQRGLP ERAVSVLRAW  600
LFEHFLHPYP TDTDKHMLAT QTGLTRSQVS NWFINARVRL WKPMVEEIHM LETKGLAESD  660
SHTVADDNVS TNGADPHLKA DHSSSKMVGK TSVAVNLECS KMGSLSEMGD YHAAKQWNQE  720
NQSRGLNGDM TSMGEGMMSI SGYHQTGLEM GGMGSVSLTL GLRQSADQMY RLEDGQRQPT  780
TFFQQQRDRM RQHLGGHTVH EYAG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A6e-17589646158Homeobox protein Meis1
4xrs_B6e-17589646158Homeobox protein Meis1
5bng_A7e-17589647159Homeobox protein Meis2
5bng_B7e-17589647159Homeobox protein Meis2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.12e-83BEL1-like homeodomain 8