PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0005s0043.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 501aa    MW: 55653.9 Da    PI: 5.7379
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0005s0043.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS398.85.6e-1221295002374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                          +elL+ cA+avs  d   a  l+  l +++s  g+p+qR+ ay++e+L+arl +s+ ++y++l+++e +   s e l+++ l+++++P+ 
  Kalax.0005s0043.1.p 129 KELLIWCAQAVSGADSFTAAILIDMLDQRVSVCGEPIQRVGAYMLEGLKARLEESGIKIYRSLHCNEPT---SPELLTSMGLLYQICPYW 215
                          789*****************************************************************9...99**************** PP

                 GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefn 179
                          kf++l aN  I ea+e+e+r+Hi+Df+i qG QW+ L+qaLa+Rp+gpp++RiTgv++++s+  +   le +ge+L+k+A++l+vpfef+
  Kalax.0005s0043.1.p 216 KFAYLSANVVIGEAAENESRIHILDFQIAQGSQWALLIQALAQRPGGPPHIRITGVDDHQSTkaRGGGLEMVGEKLSKLAASLNVPFEFH 305
                          **********************************************************9988889999********************** PP

                 GRAS 180 vlvakrle.dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                             +++++ +++l++L + p Eal+Vn+ + lh++ desvs+ ++rd++L+l+k+ sPkvv+++eqe+++n++ F+ rf+e+l+yy+a+f
  Kalax.0005s0043.1.p 306 DAEMTDFNfSVQLQNLLIYPSEALIVNFPYVLHHMADESVSTVNHRDQLLRLIKGYSPKVVTLIEQESNTNTAAFVPRFIETLDYYTAMF 395
                          986666653689****************************************************************************** PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                          +s+++klp+++++ri  E+ +++r+ivn++acegaer+erhe l+kWr+rl++aGF+++pls ++a+ +k +l+ ++++ y++ e++g+l
  Kalax.0005s0043.1.p 396 ESIDVKLPKDDSNRIRAEQNCVARDIVNMIACEGAERVERHEVLGKWRARLSMAGFTQYPLSPTVAEVIKNMLNDYSGN-YKLAEDKGAL 484
                          *****************************************************************************77.********** PP

                 GRAS 359 vlgWkdrpLvsvSaWr 374
                          +l Wk+r++ + SaWr
  Kalax.0005s0043.1.p 485 ILSWKNRAMSTSSAWR 500
                          ***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.466102481IPR005202Transcription factor GRAS
PfamPF035141.9E-119129500IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MQTSQKHHHS SGFDNFYQTT DSRTGSDNGS TGSHSSYPAS NVQIFTLESY DVTDSYMAYD  60
SPVAASVSSY MSPVSFSSQG SQSILSEHYR SPENTCESLF TGYPAVAENP SAMLIRNQII  120
ERSKKLGMKE LLIWCAQAVS GADSFTAAIL IDMLDQRVSV CGEPIQRVGA YMLEGLKARL  180
EESGIKIYRS LHCNEPTSPE LLTSMGLLYQ ICPYWKFAYL SANVVIGEAA ENESRIHILD  240
FQIAQGSQWA LLIQALAQRP GGPPHIRITG VDDHQSTKAR GGGLEMVGEK LSKLAASLNV  300
PFEFHDAEMT DFNFSVQLQN LLIYPSEALI VNFPYVLHHM ADESVSTVNH RDQLLRLIKG  360
YSPKVVTLIE QESNTNTAAF VPRFIETLDY YTAMFESIDV KLPKDDSNRI RAEQNCVARD  420
IVNMIACEGA ERVERHEVLG KWRARLSMAG FTQYPLSPTV AEVIKNMLND YSGNYKLAED  480
KGALILSWKN RAMSTSSAWR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-531325008375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021831680.10.0scarecrow-like protein 13
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLB9IH450.0B9IH45_POPTR; Uncharacterized protein
STRINGPOPTR_0016s01110.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.11e-175SCARECROW-like 13