PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kalax.0004s0329.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | YABBY | ||||||||
Protein Properties | Length: 213aa MW: 23823 Da PI: 8.6201 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 182 | 3.2e-56 | 20 | 199 | 3 | 161 |
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas.qllaaeshldeslkee....................l 71 + sss+q+Cyv+CnfC+t+lavsvPs slfk+vtvrCGhC++llsvn+ +++++h + ++++ Kalax.0004s0329.1.p 20 HSSSSHQLCYVHCNFCDTVLAVSVPSCSLFKTVTVRCGHCSNLLSVNMGALLvPPQPSSNHQYHPIHNPppslhqeelyvvntvmnnsaA 109 57899****************************************999876634566777655555554799988888888887777763 PP YABBY 72 leelkveeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWa 161 +e ++ +e++ + ++ + ++ ++ e+l++ ++++++ +++PPekrqrvPs ynrfi+eeiqrika+nPdi+hr+afsaaakn Kalax.0004s0329.1.p 110 AESEQEREQEHHRIPTMMQIQQPKRVDEMLNTFSKQKTSLFASINKPPEKRQRVPSVYNRFIREEIQRIKAGNPDITHRQAFSAAAKNVP 199 3333333333333444444444444555668888888888899*********************************************65 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.1E-57 | 23 | 200 | IPR006780 | YABBY protein |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 213 aa Download sequence Send to blast |
MSSSSTSSFS PPDHHQTLVH SSSSHQLCYV HCNFCDTVLA VSVPSCSLFK TVTVRCGHCS 60 NLLSVNMGAL LVPPQPSSNH QYHPIHNPPP SLHQEELYVV NTVMNNSAAA ESEQEREQEH 120 HRIPTMMQIQ QPKRVDEMLN TFSKQKTSLF ASINKPPEKR QRVPSVYNRF IREEIQRIKA 180 GNPDITHRQA FSAAAKNVPR SSILHLPLLN NT* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. Regulates the initiation of embryonic shoot apical meristem (SAM) development (PubMed:10457020, PubMed:12417699, PubMed:19837869). Contributes to the repression of KNOX genes (STM, KNAT1/BP and KNAT2) to avoid ectopic meristems. Binds DNA without sequence specificity (PubMed:10457020, PubMed:12417699). {ECO:0000269|PubMed:10457020, ECO:0000269|PubMed:12417699, ECO:0000269|PubMed:19837869}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001315817.1 | 6e-57 | axial regulator YABBY 1-like | ||||
Refseq | XP_009375772.1 | 5e-57 | PREDICTED: axial regulator YABBY 1 isoform X1 | ||||
Refseq | XP_020411971.1 | 5e-57 | axial regulator YABBY 1 isoform X1 | ||||
Swissprot | Q9XFB1 | 1e-46 | YAB3_ARATH; Axial regulator YABBY 3 | ||||
TrEMBL | A0A251QFS5 | 1e-55 | A0A251QFS5_PRUPE; Uncharacterized protein | ||||
TrEMBL | D9ZJG4 | 1e-55 | D9ZJG4_MALDO; YABBY domain class transcription factor | ||||
STRING | XP_009375772.1 | 2e-56 | (Pyrus x bretschneideri) | ||||
STRING | XP_008364377.1 | 2e-56 | (Malus domestica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G00180.1 | 5e-47 | YABBY family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kalax.0004s0329.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|