PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0004s0279.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

S1Fa-like

Protein Properties

Length: 76aa MW: 8081.63 Da PI: 10.7197

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0004s0279.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	128.3	2.1e-40	9	75	4	70
S1FA 4 akveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 a++ +G+n Glivllvv glll+flvgny+lyvyaqk+lPPrkkkPvskkklkre+lkqGv++PGe Kalax.0004s0279.1.p 9 ANAGGQGFNAGLIVLLVVVGLLLTFLVGNYVLYVYAQKTLPPRKKKPVSKKKLKRERLKQGVSAPGE 75 556669************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04689	1.6E-38	13	75	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 76 aa Download sequence Send to blast
MDDDLGAKAN AGGQGFNAGL IVLLVVVGLL LTFLVGNYVL YVYAQKTLPP RKKKPVSKKK 60 LKRERLKQGV SAPGE*

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010104121.2	4e-28	DNA-binding protein S1FA
Refseq	XP_024026346.1	4e-28	DNA-binding protein S1FA
Swissprot	Q7XLX6	1e-12	S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBL	W9SCA3	1e-26	W9SCA3_9ROSA; DNA-binding protein S1FA1
STRING	XP_010104121.1	2e-27	(Morus notabilis)

Link Out ? help Back to Top
Phytozome	Kalax.0004s0279.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]