PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0004s0198.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | bHLH | ||||||||
Protein Properties | Length: 237aa MW: 26161.8 Da PI: 8.8942 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.5 | 1.2e-13 | 56 | 102 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+E+rRR+riNs +++Lr++lP + K +Ka+ L k+ve +++L Kalax.0004s0198.1.p 56 RNHKEAEKRRRERINSHLDKLRSILPCS-----SKTDKASLLAKVVERVREL 102 58*************************8.....6*************99988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.612 | 53 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.4E-11 | 56 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.68E-12 | 56 | 105 | No hit | No description |
SuperFamily | SSF47459 | 4.58E-14 | 56 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-13 | 57 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.7E-11 | 59 | 108 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 5.9E-4 | 146 | 211 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0009941 | Cellular Component | chloroplast envelope | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MLPGASSEKS ELYRIMTGMC STSFDVGSSF LPSDSFDQAF CDSSSESAQR ALAALRNHKE 60 AEKRRRERIN SHLDKLRSIL PCSSKTDKAS LLAKVVERVR ELKQEAAMME QTSRKTESYC 120 LIPSESDEVT VYSSSDDGGR LIFKASLCCE DRSDLMPELI GILKSLRLKT LRAEMCTVGG 180 RIRNVLVVAA DSEHSIESIH FLQSALKGLV QKSSDTSADR SKRRRMAASA ARQLRS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028766711.1 | 9e-87 | transcription factor bHLH106 | ||||
Swissprot | O80674 | 7e-65 | BH106_ARATH; Transcription factor bHLH106 | ||||
TrEMBL | B9H8T8 | 2e-81 | B9H8T8_POPTR; BHLH family protein | ||||
STRING | POPTR_0006s03550.1 | 3e-82 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41130.1 | 6e-67 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0004s0198.1.p |
Publications ? help Back to Top | |||
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