PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0003s0302.3.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 310aa    MW: 35110.6 Da    PI: 7.9458
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0003s0302.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding292.5e-092872345
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                          WT eE +l+ +a +++ ++   +W+++a++++ g++  +++  +q
  Kalax.0003s0302.3.p 28 VWTHEENKLFENALALYDKDtpdRWAKVAAMIP-GKSVVDVIKQYQ 72
                         5********************************.*******99998 PP
2Myb_DNA-binding43.38.7e-14136180347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +W ++E+ l++ + k++G+g+W+ Iar + ++Rt+ q+ s+ qky
  Kalax.0003s0302.3.p 136 PWNEDEHRLFLMGLKKYGKGDWRNIARNFVTTRTPTQVASHAQKY 180
                          8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.4112479IPR017884SANT domain
SMARTSM007172.4E-82577IPR001005SANT/Myb domain
SuperFamilySSF466891.17E-112882IPR009057Homeodomain-like
PfamPF002493.0E-82872IPR001005SANT/Myb domain
CDDcd001673.14E-72974No hitNo description
Gene3DG3DSA:1.10.10.608.2E-12129189IPR009057Homeodomain-like
PROSITE profilePS5129419.4129185IPR017930Myb domain
TIGRFAMsTIGR015577.1E-17132184IPR006447Myb domain, plants
SuperFamilySSF466892.14E-15132184IPR009057Homeodomain-like
SMARTSM007171.9E-12133183IPR001005SANT/Myb domain
PfamPF002493.3E-11136180IPR001005SANT/Myb domain
CDDcd001676.58E-10136181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MNWGVEVLSS SSHGGSSDWL FEISMNCVWT HEENKLFENA LALYDKDTPD RWAKVAAMIP  60
GKSVVDVIKQ YQALEEDIID IEAGLIPIPG YNSSSSFTME WMVNRDFEGM KQICGSEVKR  120
CSTNLGFNQE MKKGVPWNED EHRLFLMGLK KYGKGDWRNI ARNFVTTRTP TQVASHAQKY  180
FIRQLNRGKD KRRSSIHDIT IVNLKDHASP SADTNKDLLQ DQPSSVEKSR QPSDLVCLTQ  240
TFYSPKVANR ESLMVFNSST ENSFMTSTPR TATYGHSLKE QTMHRSIFLG SQCGAQTMVF  300
HVPSVQHRQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-1729941176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002278729.11e-118PREDICTED: transcription factor DIVARICATA
RefseqXP_010654186.11e-118PREDICTED: transcription factor DIVARICATA
SwissprotQ8S9H73e-97DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A438JAN21e-118A0A438JAN2_VITVI; Transcription factor DIVARICATA
STRINGVIT_08s0007g01920.t011e-118(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.12e-93MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]