PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0003s0302.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 310aa MW: 35110.6 Da PI: 7.9458 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29 | 2.5e-09 | 28 | 72 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 WT eE +l+ +a +++ ++ +W+++a++++ g++ +++ +q Kalax.0003s0302.1.p 28 VWTHEENKLFENALALYDKDtpdRWAKVAAMIP-GKSVVDVIKQYQ 72 5********************************.*******99998 PP | |||||||
2 | Myb_DNA-binding | 43.3 | 8.7e-14 | 136 | 180 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W ++E+ l++ + k++G+g+W+ Iar + ++Rt+ q+ s+ qky Kalax.0003s0302.1.p 136 PWNEDEHRLFLMGLKKYGKGDWRNIARNFVTTRTPTQVASHAQKY 180 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 8.411 | 24 | 79 | IPR017884 | SANT domain |
SMART | SM00717 | 2.4E-8 | 25 | 77 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.17E-11 | 28 | 82 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.0E-8 | 28 | 72 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.14E-7 | 29 | 74 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.2E-12 | 129 | 189 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.4 | 129 | 185 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 7.1E-17 | 132 | 184 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 2.14E-15 | 132 | 184 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-12 | 133 | 183 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-11 | 136 | 180 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.58E-10 | 136 | 181 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MNWGVEVLSS SSHGGSSDWL FEISMNCVWT HEENKLFENA LALYDKDTPD RWAKVAAMIP 60 GKSVVDVIKQ YQALEEDIID IEAGLIPIPG YNSSSSFTME WMVNRDFEGM KQICGSEVKR 120 CSTNLGFNQE MKKGVPWNED EHRLFLMGLK KYGKGDWRNI ARNFVTTRTP TQVASHAQKY 180 FIRQLNRGKD KRRSSIHDIT IVNLKDHASP SADTNKDLLQ DQPSSVEKSR QPSDLVCLTQ 240 TFYSPKVANR ESLMVFNSST ENSFMTSTPR TATYGHSLKE QTMHRSIFLG SQCGAQTMVF 300 HVPSVQHRQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 6e-17 | 29 | 94 | 11 | 76 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002278729.1 | 1e-118 | PREDICTED: transcription factor DIVARICATA | ||||
Refseq | XP_010654186.1 | 1e-118 | PREDICTED: transcription factor DIVARICATA | ||||
Swissprot | Q8S9H7 | 3e-97 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A438JAN2 | 1e-118 | A0A438JAN2_VITVI; Transcription factor DIVARICATA | ||||
STRING | VIT_08s0007g01920.t01 | 1e-118 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 2e-93 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0003s0302.1.p |
Publications ? help Back to Top | |||
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