PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0003s0296.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 531aa    MW: 59139.6 Da    PI: 9.3088
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0003s0296.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.4e-175298148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g WT+ Ed+ll +av+++ g++Wk+Ia+ ++ gR++ qc +rwqk+l
  Kalax.0003s0296.2.p 52 KGGWTPREDDLLRQAVEEFKGKSWKKIAEFFP-GRSEVQCLHRWQKVL 98
                         688*****************************.************986 PP
2Myb_DNA-binding54.72.3e-17104150148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g+WT+eEd+++ + v+ +G+  W++Ia+ ++ gR +kqc++rw+++l
  Kalax.0003s0296.2.p 104 KGPWTQEEDDKITEMVAGYGPTKWSLIAKALP-GRIGKQCRERWHNHL 150
                          79******************************.*************97 PP
3Myb_DNA-binding52.98.3e-17156199146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          r++WT eE++ l +a++ +G++ W+ Ia+ ++ gR+++ +k++w++
  Kalax.0003s0296.2.p 156 RDSWTLEEELALMNAHRAHGNK-WAEIAKALP-GRSDNAIKNHWNS 199
                          789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.6494798IPR017930Myb domain
SMARTSM007175.2E-1551100IPR001005SANT/Myb domain
PfamPF002493.4E-165298IPR001005SANT/Myb domain
SuperFamilySSF466892.23E-1753116IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-2254110IPR009057Homeodomain-like
CDDcd001671.04E-135598No hitNo description
PROSITE profilePS5129431.05599154IPR017930Myb domain
SuperFamilySSF466893.03E-30101197IPR009057Homeodomain-like
SMARTSM007172.1E-16103152IPR001005SANT/Myb domain
CDDcd001674.54E-14106150No hitNo description
PfamPF139211.6E-16107165No hitNo description
Gene3DG3DSA:1.10.10.601.7E-26111157IPR009057Homeodomain-like
SMARTSM007171.0E-15155203IPR001005SANT/Myb domain
PROSITE profilePS5129421.395155205IPR017930Myb domain
CDDcd001672.59E-11158201No hitNo description
Gene3DG3DSA:1.10.10.609.4E-23158205IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MVELCLENKQ SVPTSSSSYS DETVSARSPG FSSPATNSSH RRRTTGPVRR VKGGWTPRED  60
DLLRQAVEEF KGKSWKKIAE FFPGRSEVQC LHRWQKVLDP DLVKGPWTQE EDDKITEMVA  120
GYGPTKWSLI AKALPGRIGK QCRERWHNHL NPEIKRDSWT LEEELALMNA HRAHGNKWAE  180
IAKALPGRSD NAIKNHWNSS LKKKMGFYVA TGSLPPITKT GSPRGVMNMK KQGKRVKFPV  240
RSAGESGSNA EKITGITVCC KLEGDLFETQ ALLEDALYSS GTPSNDSEDA KSIRNQRLCP  300
DIQCSFSGLV FKEKQNCGGP GSMDGTKVTG SEQLTYSCLY YEPPKFNIVG RTDSGLLNMP  360
HSDCRHGPPL SPARFHSPLG EKRLDSCIRS PEHILKSAAR TFQNTPSIFR KRRSETQLQS  420
PSTKSDSAEE ELMSEYSLND GKNLKSDEIR KFESGDVLFF GSTTHLSSSK DGESYGKSLN  480
TFNRYRLTYK RTAILKSVEK RLDLTFAGLA VKDCSPTTEG SQCTNNFEMT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C8e-66402056159MYB PROTO-ONCOGENE PROTEIN
1h89_C8e-66402056159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010654284.11e-163PREDICTED: uncharacterized protein LOC100256181 isoform X1
TrEMBLF6HLC51e-161F6HLC5_VITVI; Uncharacterized protein
STRINGVIT_08s0007g00360.t011e-162(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-122myb domain protein 3r-5